Diversity and Composition of Pelagic Prokaryotic and Protist Communities in a Thin Arctic Sea-Ice Regime.
Arctic Ocean
Diversity
Microbiota
Prokaryotes
Protists
SSU rRNA amplicon
Sea ice
Structure
Journal
Microbial ecology
ISSN: 1432-184X
Titre abrégé: Microb Ecol
Pays: United States
ID NLM: 7500663
Informations de publication
Date de publication:
Aug 2019
Aug 2019
Historique:
received:
26
07
2018
accepted:
25
12
2018
pubmed:
10
1
2019
medline:
19
7
2019
entrez:
10
1
2019
Statut:
ppublish
Résumé
One of the most prominent manifestations of climate change is the changing Arctic sea-ice regime with a reduction in the summer sea-ice extent and a shift from thicker, perennial multiyear ice towards thinner, first-year ice. These changes in the physical environment are likely to impact microbial communities, a key component of Arctic marine food webs and biogeochemical cycles. During the Norwegian young sea ICE expedition (N-ICE2015) north of Svalbard, seawater samples were collected at the surface (5 m), subsurface (20 or 50 m), and mesopelagic (250 m) depths on 9 March, 27 April, and 16 June 2015. In addition, several physical and biogeochemical data were recorded to contextualize the collected microbial communities. Through the massively parallel sequencing of the small subunit ribosomal RNA amplicon and metagenomic data, this work allows studying the Arctic's microbial community structure during the late winter to early summer transition. Results showed that, at compositional level, Alpha- (30.7%) and Gammaproteobacteria (28.6%) are the most frequent taxa across the prokaryotic N-ICE2015 collection, and also the most phylogenetically diverse. Winter to early summer trends were quite evident since there was a high relative abundance of thaumarchaeotes in the under-ice water column in late winter while this group was nearly absent during early summer. Moreover, the emergence of Flavobacteria and the SAR92 clade in early summer might be associated with the degradation of a spring bloom of Phaeocystis. High relative abundance of hydrocarbonoclastic bacteria, particularly Alcanivorax (54.3%) and Marinobacter (6.3%), was also found. Richness showed different patterns along the depth gradient for prokaryotic (highest at mesopelagic depth) and protistan communities (higher at subsurface depths). The microbial N-ICE2015 collection analyzed in the present study provides comprehensive new knowledge about the pelagic microbiota below drifting Arctic sea-ice. The higher microbial diversity found in late winter/early spring communities reinforces the need to continue with further studies to properly characterize the winter microbial communities under the pack-ice.
Identifiants
pubmed: 30623212
doi: 10.1007/s00248-018-01314-2
pii: 10.1007/s00248-018-01314-2
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
388-408Subventions
Organisme : Research Council of Norway
ID : 244646
Organisme : Structured Program of R&D&I MarInfo
ID : NORTE-01-0145-FEDER-000031
Organisme : Norwegian Ministries of Foreign Affairs and Climate and Environment
ID : Arktis 2030
Organisme : Funda??o para a Ci?ncia e a Tecnologia
ID : NITROLIMIT - PTDC 2017 - PTDC/CTA-AMB/30997/2017
Références
Annu Rev Microbiol. 1999;53:189-215
pubmed: 10547690
FEMS Microbiol Ecol. 2001 May;35(3):267-275
pubmed: 11311437
Appl Environ Microbiol. 2002 Feb;68(2):505-18
pubmed: 11823184
Nature. 2002 Dec 19-26;420(6917):806-10
pubmed: 12490947
Appl Environ Microbiol. 2004 Jul;70(7):4129-35
pubmed: 15240292
Science. 2005 Aug 19;309(5738):1242-5
pubmed: 16109880
FEMS Microbiol Ecol. 2005 Jan 1;51(2):265-77
pubmed: 16329875
Appl Environ Microbiol. 2005 Dec;71(12):8228-35
pubmed: 16332807
Appl Environ Microbiol. 2006 Jul;72(7):5069-72
pubmed: 16820507
Appl Environ Microbiol. 2007 Mar;73(5):1576-85
pubmed: 17220268
Appl Environ Microbiol. 2007 Apr;73(7):2290-6
pubmed: 17293499
Environ Microbiol. 2007 May;9(5):1219-32
pubmed: 17472636
Curr Opin Biotechnol. 2007 Jun;18(3):257-66
pubmed: 17493798
Appl Environ Microbiol. 2007 Aug;73(16):5261-7
pubmed: 17586664
Science. 1986 Sep 19;233(4770):1314-6
pubmed: 17843360
Science. 2007 Dec 14;318(5857):1782-6
pubmed: 18079405
Nature. 2008 Apr 10;452(7188):741-4
pubmed: 18337719
Proc Natl Acad Sci U S A. 2008 Jun 3;105(22):7774-8
pubmed: 18509059
Environ Microbiol. 2008 Sep;10(9):2433-43
pubmed: 18537812
Proc Natl Acad Sci U S A. 2008 Jun 24;105(25):8724-9
pubmed: 18552178
Environ Microbiol. 2008 Sep;10(9):2444-54
pubmed: 18557769
Evol Bioinform Online. 2007 Feb 17;2:121-8
pubmed: 19455206
FEMS Microbiol Ecol. 2004 Mar 1;47(3):345-57
pubmed: 19712323
Appl Environ Microbiol. 2009 Dec;75(23):7537-41
pubmed: 19801464
Science. 2009 Oct 23;326(5952):539
pubmed: 19900890
ISME J. 2010 Apr;4(4):564-76
pubmed: 20010630
Environ Microbiol. 2010 May;12(5):1132-43
pubmed: 20132284
Mol Ecol. 2010 Mar;19 Suppl 1:21-31
pubmed: 20331767
Nat Methods. 2010 May;7(5):335-6
pubmed: 20383131
Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4516-22
pubmed: 20534432
Mol Ecol. 2010 Jul;19(14):2908-15
pubmed: 20609083
Appl Environ Microbiol. 2011 Mar;77(6):2026-34
pubmed: 21239542
PLoS One. 2011 May 09;6(5):e19725
pubmed: 21573025
Bioinformatics. 2011 Aug 15;27(16):2194-200
pubmed: 21700674
ISME J. 2012 Jan;6(1):11-20
pubmed: 21716307
Proc Natl Acad Sci U S A. 2011 Oct 4;108(40):16771-6
pubmed: 21930919
PLoS One. 2011;6(11):e27492
pubmed: 22096583
Appl Environ Microbiol. 2012 Apr;78(7):2402-9
pubmed: 22286998
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712
ISME J. 2012 Aug;6(8):1621-4
pubmed: 22402401
ISME J. 2012 Oct;6(10):1901-15
pubmed: 22534611
Science. 2012 Jun 15;336(6087):1408
pubmed: 22678359
Appl Environ Microbiol. 2012 Nov;78(21):7501-10
pubmed: 22923400
Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17989-94
pubmed: 23027926
Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17633-8
pubmed: 23045668
Nucleic Acids Res. 2013 Jan;41(Database issue):D597-604
pubmed: 23193267
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6
pubmed: 23193283
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
ISME J. 2013 Sep;7(9):1669-77
pubmed: 23514781
PLoS One. 2013 Apr 22;8(4):e61217
pubmed: 23630581
Appl Environ Microbiol. 2013 Sep;79(17):5112-20
pubmed: 23793624
FEMS Microbiol Ecol. 2014 Feb;87(2):378-89
pubmed: 24111503
ISME J. 2014 Jan;8(1):245-8
pubmed: 24132076
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
PLoS One. 2014 Jan 31;9(1):e86887
pubmed: 24497990
ISME J. 2014 Oct;8(10):1953-61
pubmed: 24553471
Sci Rep. 2014 Apr 11;4:4661
pubmed: 24722490
FEMS Microbiol Ecol. 2014 Oct;90(1):115-25
pubmed: 25041280
Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11395-400
pubmed: 25053816
Appl Environ Microbiol. 2014 Oct;80(19):6013-22
pubmed: 25063662
Mar Genomics. 2014 Dec;18 Pt B:185-92
pubmed: 25211053
Microbiome. 2014 Sep 05;2:34
pubmed: 25258679
Front Microbiol. 2014 Dec 19;5:646
pubmed: 25566197
PLoS Comput Biol. 2015 May 07;11(5):e1004226
pubmed: 25950956
Gigascience. 2015 Jun 19;4:27
pubmed: 26097697
Environ Microbiol. 2016 May;18(5):1403-14
pubmed: 26271760
Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13591-6
pubmed: 26438854
Nucleic Acids Res. 2016 Jan 4;44(D1):D595-603
pubmed: 26582919
J Eukaryot Microbiol. 2016 Jul;63(4):419-39
pubmed: 26662881
ISME J. 2016 Oct;10(10):2543-52
pubmed: 26882269
PLoS One. 2016 Feb 19;11(2):e0148512
pubmed: 26895333
Elife. 2016 Apr 07;5:e11888
pubmed: 27054497
Environ Microbiol Rep. 2016 Aug;8(4):527-35
pubmed: 27264318
Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7888-93
pubmed: 27339136
Environ Microbiol. 2017 Dec;19(12):4838-4850
pubmed: 27422798
FEMS Microbiol Ecol. 2017 Jan;93(1):
pubmed: 27677681
J Eukaryot Microbiol. 2017 May;64(3):370-382
pubmed: 27687286
Nucleic Acids Res. 2017 Jan 4;45(D1):D507-D516
pubmed: 27738135
PeerJ. 2016 Oct 18;4:e2584
pubmed: 27781170
Front Microbiol. 2016 Nov 23;7:1884
pubmed: 27933047
Sci Rep. 2017 Jan 19;7:40850
pubmed: 28102329
mSphere. 2017 Mar 8;2(2):
pubmed: 28289728
Science. 2017 Apr 21;356(6335):285-291
pubmed: 28386025
ISME J. 2017 Jul;11(7):1614-1629
pubmed: 28398348
Front Microbiol. 2017 Jun 14;8:1121
pubmed: 28659910
Front Microbiol. 2017 Jun 28;8:1099
pubmed: 28702000
Front Microbiol. 2018 Jan 23;9:24
pubmed: 29410658
Chemosphere. 2018 May;199:54-67
pubmed: 29428516
Sci Rep. 2018 May 16;8(1):7703
pubmed: 29769577
Nature. 1994 Oct 20;371(6499):695-7
pubmed: 7935813
Int J Syst Bacteriol. 1998 Jan;48 Pt 1:223-35
pubmed: 9542092