Biallelic mutations in valyl-tRNA synthetase gene VARS are associated with a progressive neurodevelopmental epileptic encephalopathy.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
12 02 2019
Historique:
received: 05 01 2018
accepted: 03 10 2018
entrez: 14 2 2019
pubmed: 14 2 2019
medline: 12 4 2019
Statut: epublish

Résumé

Aminoacyl-tRNA synthetases (ARSs) function to transfer amino acids to cognate tRNA molecules, which are required for protein translation. To date, biallelic mutations in 31 ARS genes are known to cause recessive, early-onset severe multi-organ diseases. VARS encodes the only known valine cytoplasmic-localized aminoacyl-tRNA synthetase. Here, we report seven patients from five unrelated families with five different biallelic missense variants in VARS. Subjects present with a range of global developmental delay, epileptic encephalopathy and primary or progressive microcephaly. Longitudinal assessment demonstrates progressive cortical atrophy and white matter volume loss. Variants map to the VARS tRNA binding domain and adjacent to the anticodon domain, and disrupt highly conserved residues. Patient primary cells show intact VARS protein but reduced enzymatic activity, suggesting partial loss of function. The implication of VARS in pediatric neurodegeneration broadens the spectrum of human diseases due to mutations in tRNA synthetase genes.

Identifiants

pubmed: 30755602
doi: 10.1038/s41467-018-07067-3
pii: 10.1038/s41467-018-07067-3
pmc: PMC6372641
doi:

Substances chimiques

Anticodon 0
RNA, Transfer 9014-25-9
Valine-tRNA Ligase EC 6.1.1.9

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

707

Subventions

Organisme : NHGRI NIH HHS
ID : UM1 HG008900
Pays : United States
Organisme : NHGRI NIH HHS
ID : UM1 HG006504
Pays : United States
Organisme : NINDS NIH HHS
ID : P30 NS047101
Pays : United States
Organisme : NIH HHS
ID : S10 OD018521
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS098004
Pays : United States

Références

Nat Protoc. 2015 Jun;10(6):845-58
pubmed: 25950237
Science. 2014 Jan 31;343(6170):506-511
pubmed: 24482476
Cell. 2014 Apr 24;157(3):651-63
pubmed: 24766810
Am J Hum Genet. 2010 Jan;86(1):77-82
pubmed: 20045102
Am J Hum Genet. 2017 May 4;100(5):695-705
pubmed: 28475856
J Biol Chem. 1994 Jan 21;269(3):2086-92
pubmed: 8294461
RNA. 2003 Jan;9(1):100-11
pubmed: 12554880
Nat Genet. 2008 Sep;40(9):1113-8
pubmed: 18711368
Nat Chem Biol. 2013 Mar;9(3):145-53
pubmed: 23416400
Cell. 2014 Apr 24;157(3):636-50
pubmed: 24766809
Cell Rep. 2015 Jan 13;10(2):148-61
pubmed: 25558065
Hum Mol Genet. 2017 Oct 1;26(R2):R114-R127
pubmed: 28633377
Neurology. 2010 Oct 19;75(16):1459-64
pubmed: 20956791
Nat Commun. 2015 Jul 07;6:7623
pubmed: 26151409
Hum Mutat. 2012 Jan;33(1):244-53
pubmed: 22009580
BMC Med Genet. 2013 Oct 08;14:106
pubmed: 24103465
Mol Genet Metab. 2012 Jul;106(3):351-8
pubmed: 22607940
Annu Rev Genomics Hum Genet. 2008;9:87-107
pubmed: 18767960
JAMA. 2014 Jul 2;312(1):68-77
pubmed: 25058219
Structure. 2003 May;11(5):591-603
pubmed: 12737824
Hum Mutat. 2017 Oct;38(10):1348-1354
pubmed: 28493438
Nat Genet. 2015 May;47(5):528-34
pubmed: 25848753
JIMD Rep. 2017;33:61-68
pubmed: 27571996
PLoS One. 2012;7(1):e28936
pubmed: 22279524
Proc Natl Acad Sci U S A. 2011 Apr 19;108(16):6543-8
pubmed: 21464306
Am J Hum Genet. 2018 Apr 5;102(4):676-684
pubmed: 29576217
Hum Mutat. 2015 Feb;36(2):222-31
pubmed: 25385316
Hum Mutat. 2017 Jun;38(6):621-636
pubmed: 28236339
Ann Neurol. 2014 Jul;76(1):134-9
pubmed: 24777941
Am J Hum Genet. 2013 Jul 11;93(1):132-40
pubmed: 23768514
Hum Mutat. 2013 Jan;34(1):191-9
pubmed: 22930593
Am J Hum Genet. 2010 Dec 10;87(6):820-8
pubmed: 21092922
J Biol Chem. 1999 Feb 19;274(8):4545-50
pubmed: 9988688
Brain. 2015 Aug;138(Pt 8):2161-72
pubmed: 26072516
Hum Mutat. 2014 Aug;35(8):983-9
pubmed: 24827421
Science. 2014 Jul 18;345(6194):328-32
pubmed: 25035493
Nat Genet. 2006 Feb;38(2):197-202
pubmed: 16429158
Am J Hum Genet. 2013 May 2;92(5):774-80
pubmed: 23643384
Nature. 2014 Apr 24;508(7497):469-76
pubmed: 24759409
Cell. 2000 Nov 22;103(5):793-803
pubmed: 11114335
Metab Brain Dis. 2017 Feb;32(1):267-270
pubmed: 27502409
Nat Rev Mol Cell Biol. 2018 Jan;19(1):45-58
pubmed: 28875994
Neuron. 2015 Nov 4;88(3):499-513
pubmed: 26539891
Cold Spring Harb Mol Case Stud. 2017 Sep 1;3(5):
pubmed: 28864462
Am J Hum Genet. 2003 May;72(5):1293-9
pubmed: 12690580
Nature. 2011 Sep 21;478(7367):57-63
pubmed: 21937992
J Med Genet. 2015 Aug;52(8):532-40
pubmed: 25787132
Neurogenetics. 2014 Aug;15(3):157-9
pubmed: 24958424
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W363-7
pubmed: 15980490

Auteurs

Jennifer Friedman (J)

Department of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA.
Division of Child Neurology, Rady Children's Hospital, San Diego, CA, 92123, USA.
Department of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA.
Rady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA.

Desiree E Smith (DE)

Department of Clinical Chemistry, Metabolic Unit, Amsterdam UMC (University Medical Centers), Vrije Universiteit Amsterdam, 1081 HV, Amsterdam, The Netherlands.
Gastroenterology & Metabolism Amsterdam Neuroscience, 1081 HV, Amsterdam, The Netherlands.

Mahmoud Y Issa (MY)

Department of Clinical Genetics, National Research Centre, Cairo, 12311, Egypt.

Valentina Stanley (V)

Department of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA.
Department of Neurosciences, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA, 92093, USA.

Rengang Wang (R)

Department of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA.
Department of Neurosciences, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA, 92093, USA.

Marisa I Mendes (MI)

Department of Clinical Chemistry, Metabolic Unit, Amsterdam UMC (University Medical Centers), Vrije Universiteit Amsterdam, 1081 HV, Amsterdam, The Netherlands.
Gastroenterology & Metabolism Amsterdam Neuroscience, 1081 HV, Amsterdam, The Netherlands.

Meredith S Wright (MS)

Rady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA.

Kristen Wigby (K)

Department of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA.
Rady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA.

Amber Hildreth (A)

Department of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA.
Rady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA.

John R Crawford (JR)

Department of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA.
Division of Child Neurology, Rady Children's Hospital, San Diego, CA, 92123, USA.
Department of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA.

Alanna E Koehler (AE)

Department of Neurosciences, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA, 92093, USA.

Shimul Chowdhury (S)

Rady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA.

Shareef Nahas (S)

Rady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA.

Liting Zhai (L)

IAS HKUST-Scripps R&D Laboratory, Institute for Advanced Study, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China.

Zhiwen Xu (Z)

IAS HKUST-Scripps R&D Laboratory, Institute for Advanced Study, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China.
Pangu Biopharma, Edinburgh Tower, The Landmark, 15 Queen's Road Central, Hong Kong, China.

Wing-Sze Lo (WS)

IAS HKUST-Scripps R&D Laboratory, Institute for Advanced Study, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China.
Pangu Biopharma, Edinburgh Tower, The Landmark, 15 Queen's Road Central, Hong Kong, China.

Kiely N James (KN)

Department of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA.
Department of Neurosciences, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA, 92093, USA.

Damir Musaev (D)

Department of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA.
Department of Neurosciences, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA, 92093, USA.

Andrea Accogli (A)

Departments of Neurology and Neurosurgery, Pediatrics and Human Genetics, McGill University, Montreal, H3A 0G4, Canada.
IRCCS Istituto Giannina Gaslini, Genova, 16147, Italy.

Kether Guerrero (K)

Departments of Neurology and Neurosurgery, Pediatrics and Human Genetics, McGill University, Montreal, H3A 0G4, Canada.
Division of Medical Genetics, Montreal Children's Hospital, McGill University Health Center, Montreal, H4A 3J1, Canada.
Child Health and Human Development Program, Research Institute of the McGill University Health Center, Montreal, H4A 3J1, Canada.

Luan T Tran (LT)

Departments of Neurology and Neurosurgery, Pediatrics and Human Genetics, McGill University, Montreal, H3A 0G4, Canada.
Division of Medical Genetics, Montreal Children's Hospital, McGill University Health Center, Montreal, H4A 3J1, Canada.
Child Health and Human Development Program, Research Institute of the McGill University Health Center, Montreal, H4A 3J1, Canada.

Tarek E I Omar (TEI)

Department of Pediatrics, Alexandria University, Alexandria, 21526, Egypt.

Tawfeg Ben-Omran (T)

Clinical and Metabolic Genetics, Department of Pediatrics, Hamad Medical Corporation, 3050, Doha, Qatar.

David Dimmock (D)

Rady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA.

Stephen F Kingsmore (SF)

Rady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA.

Gajja S Salomons (GS)

Department of Clinical Chemistry, Metabolic Unit, Amsterdam UMC (University Medical Centers), Vrije Universiteit Amsterdam, 1081 HV, Amsterdam, The Netherlands.
Gastroenterology & Metabolism Amsterdam Neuroscience, 1081 HV, Amsterdam, The Netherlands.

Maha S Zaki (MS)

Department of Clinical Genetics, National Research Centre, Cairo, 12311, Egypt.

Geneviève Bernard (G)

Departments of Neurology and Neurosurgery, Pediatrics and Human Genetics, McGill University, Montreal, H3A 0G4, Canada.
Division of Medical Genetics, Montreal Children's Hospital, McGill University Health Center, Montreal, H4A 3J1, Canada.
Child Health and Human Development Program, Research Institute of the McGill University Health Center, Montreal, H4A 3J1, Canada.

Joseph G Gleeson (JG)

Department of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA. jogleeson@ucsd.edu.
Division of Child Neurology, Rady Children's Hospital, San Diego, CA, 92123, USA. jogleeson@ucsd.edu.
Department of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA. jogleeson@ucsd.edu.
Rady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA. jogleeson@ucsd.edu.
Department of Neurosciences, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA, 92093, USA. jogleeson@ucsd.edu.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH