Complete Phase Diagram for Liquid-Liquid Phase Separation of Intrinsically Disordered Proteins.
Journal
The journal of physical chemistry letters
ISSN: 1948-7185
Titre abrégé: J Phys Chem Lett
Pays: United States
ID NLM: 101526034
Informations de publication
Date de publication:
18 Apr 2019
18 Apr 2019
Historique:
pubmed:
16
3
2019
medline:
2
5
2019
entrez:
16
3
2019
Statut:
ppublish
Résumé
A number of intrinsically disordered proteins have been shown to self-assemble via liquid-liquid phase separation into protein-rich and dilute phases. The resulting coacervates can have important biological functions, and the ability to form these assemblies is dictated by the protein's primary amino acid sequence as well as by the solution conditions. We present a complete phase diagram for the simple coacervation of a polyampholyte intrinsically disordered protein using a field-theoretic simulation approach. We show that differences in the primary amino acid sequence and in the distribution of charged amino acids along the sequence lead to differences in the phase window for coacervation, with block-charged sequences having a larger coacervation window than sequences with a random patterning of charges. The model also captures how changing solution conditions modifies the phase diagram and can serve to guide experimental studies.
Identifiants
pubmed: 30873835
doi: 10.1021/acs.jpclett.9b00099
pmc: PMC7379843
mid: NIHMS1602594
doi:
Substances chimiques
Intrinsically Disordered Proteins
0
Types de publication
Letter
Langues
eng
Sous-ensembles de citation
IM
Pagination
1644-1652Subventions
Organisme : NIA NIH HHS
ID : R01 AG056058
Pays : United States
Références
Cell. 2015 Aug 27;162(5):1066-77
pubmed: 26317470
PLoS Comput Biol. 2018 Jan 24;14(1):e1005941
pubmed: 29364893
Mol Cell. 2015 Mar 5;57(5):936-947
pubmed: 25747659
Arch Biochem Biophys. 2008 Jan 1;469(1):132-41
pubmed: 17931593
Phys Rev A. 1992 Sep 15;46(6):R3012-R3015
pubmed: 9908546
Biophys J. 2017 May 23;112(10):2043-2046
pubmed: 28483149
Nature. 2016 Nov 09;539(7628):227-235
pubmed: 27830791
Structure. 2013 Sep 3;21(9):1492-9
pubmed: 24010708
Proc Natl Acad Sci U S A. 2017 Sep 26;114(39):E8194-E8203
pubmed: 28894006
Nat Commun. 2017 Nov 2;8(1):1273
pubmed: 29097695
Proc Natl Acad Sci U S A. 2019 Apr 23;116(17):8224-8232
pubmed: 30948640
Proteins. 2000 Nov 15;41(3):415-27
pubmed: 11025552
Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4334-9
pubmed: 21368180
Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13392-7
pubmed: 23901099
J Chem Phys. 2010 Jan 14;132(2):024104
pubmed: 20095660
FEBS Lett. 2015 Jan 2;589(1):15-22
pubmed: 25436423
J Chem Phys. 2018 Oct 28;149(16):163323
pubmed: 30384718
Biochemistry. 2018 May 1;57(17):2520-2529
pubmed: 29509425
J Chem Phys. 2013 May 28;138(20):204907
pubmed: 23742516
Nat Rev Mol Cell Biol. 2005 Mar;6(3):197-208
pubmed: 15738986
EMBO J. 2018 Apr 3;37(7):
pubmed: 29472250
J Phys Chem B. 2018 May 31;122(21):5418-5431
pubmed: 29397728
J Chem Phys. 2018 Mar 28;148(12):123305
pubmed: 29604827
Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14609-14
pubmed: 20639465
PLoS Biol. 2017 Jul 6;15(7):e2002183
pubmed: 28683104
J Chem Phys. 2012 Jan 14;136(2):024903
pubmed: 22260612
Biochemistry. 2018 May 1;57(17):2499-2508
pubmed: 29509422
Science. 2009 Jun 26;324(5935):1729-32
pubmed: 19460965
Proc Natl Acad Sci U S A. 2018 Oct 2;115(40):9929-9934
pubmed: 30217894
Phys Chem Chem Phys. 2018 Nov 21;20(45):28558-28574
pubmed: 30397688
J Cell Physiol Suppl. 1957 May;49(Suppl 1):7-22; discussion, 22-6
pubmed: 13449108
J Phys Chem B. 2016 Aug 11;120(31):7615-34
pubmed: 27414265
J Chem Phys. 2019 Jul 21;151(3):034904
pubmed: 31325933
Soft Matter. 2017 Oct 11;13(39):7001-7012
pubmed: 28840212
Cell. 2015 Sep 24;163(1):123-33
pubmed: 26406374
J Chem Phys. 2008 Jun 14;128(22):224908
pubmed: 18554054
J Chem Phys. 2017 Jun 14;146(22):224902
pubmed: 29166038
J Chem Phys. 2011 Jun 28;134(24):244514
pubmed: 21721650
J Chem Phys. 2017 Feb 28;146(8):084901
pubmed: 28249457
Annu Rev Biochem. 2006;75:333-66
pubmed: 16756495
Int J Mol Sci. 2018 May 04;19(5):
pubmed: 29734651
J Chem Phys. 2008 Oct 14;129(14):144703
pubmed: 19045161
Nat Commun. 2017 Aug 17;8(1):275
pubmed: 28819146
Phys Rev Lett. 2016 Oct 21;117(17):178101
pubmed: 27824447
J Chem Phys. 2015 Aug 28;143(8):085101
pubmed: 26328871