Relative Abundance of Transcripts (
Algorithms
Differential Isoform Usage
Feature selection
Gene regulation
Transcriptional regulation
Transcriptomics
Visualization
Journal
F1000Research
ISSN: 2046-1402
Titre abrégé: F1000Res
Pays: England
ID NLM: 101594320
Informations de publication
Date de publication:
2019
2019
Historique:
accepted:
08
02
2019
entrez:
26
3
2019
pubmed:
25
3
2019
medline:
11
6
2020
Statut:
epublish
Résumé
The biological importance of changes in RNA expression is reflected by the wide variety of tools available to characterise these changes from RNA-seq data. Several tools exist for detecting differential transcript isoform usage (DTU) from aligned or assembled RNA-seq data, but few exist for DTU detection from alignment-free RNA-seq quantifications. We present the
Identifiants
pubmed: 30906538
doi: 10.12688/f1000research.17916.1
pmc: PMC6426083
doi:
Substances chimiques
Protein Isoforms
0
Types de publication
Comparative Study
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
213Subventions
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/H002286/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/J00247X/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/M010066/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/M010066/1
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 098439/Z/12/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : WT097945
Pays : United Kingdom
Déclaration de conflit d'intérêts
No competing interests were disclosed.
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