ATAC-seq reveals regional differences in enhancer accessibility during the establishment of spatial coordinates in the
Animals
Blastoderm
/ embryology
Body Patterning
/ genetics
Chromatin
/ metabolism
Chromatin Assembly and Disassembly
/ genetics
Drosophila
/ embryology
Embryonic Development
/ genetics
Enhancer Elements, Genetic
Gene Expression Regulation, Developmental
Promoter Regions, Genetic
Sequence Analysis, DNA
Spatial Analysis
Time Factors
Transcription Factors
/ metabolism
Journal
Genome research
ISSN: 1549-5469
Titre abrégé: Genome Res
Pays: United States
ID NLM: 9518021
Informations de publication
Date de publication:
05 2019
05 2019
Historique:
received:
31
07
2018
accepted:
26
03
2019
pubmed:
10
4
2019
medline:
28
11
2019
entrez:
10
4
2019
Statut:
ppublish
Résumé
Establishment of spatial coordinates during
Identifiants
pubmed: 30962180
pii: gr.242362.118
doi: 10.1101/gr.242362.118
pmc: PMC6499308
doi:
Substances chimiques
Chromatin
0
Transcription Factors
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
771-783Informations de copyright
© 2019 Bozek et al.; Published by Cold Spring Harbor Laboratory Press.
Références
Elife. 2017 Sep 11;6:
pubmed: 28891464
Nucleic Acids Res. 2017 Jan 4;45(D1):D663-D671
pubmed: 27799470
Genome Biol. 2011;12(5):R43
pubmed: 21569360
PLoS Comput Biol. 2010 Sep 16;6(9):
pubmed: 20862354
Elife. 2016 Nov 23;5:
pubmed: 27879204
Genes Dev. 2017 Sep 1;31(17):1784-1794
pubmed: 28982761
Genome Res. 2011 Feb;21(2):164-74
pubmed: 21177973
Curr Biol. 2010 Sep 14;20(17):R754-63
pubmed: 20833320
Nature. 2014 Aug 7;512(7512):91-5
pubmed: 24896182
Elife. 2014 Oct 14;3:
pubmed: 25313869
Nat Protoc. 2011 Jan;6(1):56-68
pubmed: 21212783
Cell. 1993 Jan 15;72(1):73-84
pubmed: 8422685
PLoS Biol. 2004 Sep;2(9):E271
pubmed: 15340490
Genetics. 2004 Apr;166(4):1775-82
pubmed: 15126397
Genome Biol. 2009;10(7):R80
pubmed: 19627575
Genes Dev. 2007 Feb 15;21(4):385-90
pubmed: 17322397
Mol Syst Biol. 2010;6:341
pubmed: 20087339
PLoS Biol. 2010 Mar 23;8(3):e1000343
pubmed: 20351773
Proc Natl Acad Sci U S A. 2005 Apr 5;102(14):4936-42
pubmed: 15788537
Genome Biol. 2014;15(12):550
pubmed: 25516281
Science. 2010 Dec 24;330(6012):1787-97
pubmed: 21177974
PLoS Genet. 2018 May 4;14(5):e1007367
pubmed: 29727464
Genome Res. 2012 Apr;22(4):656-65
pubmed: 22247430
Genome Res. 2015 Nov;25(11):1757-70
pubmed: 26314830
Curr Protoc Mol Biol. 2015 Jan 05;109:21.29.1-21.29.9
pubmed: 25559105
Curr Opin Genet Dev. 2013 Apr;23(2):116-23
pubmed: 23266217
Development. 1987 Mar;99(3):327-32
pubmed: 3653004
PLoS Biol. 2010 Aug 17;8(8):
pubmed: 20808951
Nucleic Acids Res. 2011 Jan;39(Database issue):D118-23
pubmed: 20965965
Curr Biol. 2005 Nov 8;15(21):R887-99
pubmed: 16271864
Nature. 2009 Jun 18;459(7249):927-30
pubmed: 19536255
Proc Natl Acad Sci U S A. 2008 Jul 15;105(28):9715-20
pubmed: 18621688
Dev Biol. 2008 Jan 15;313(2):844-62
pubmed: 18067886
Curr Biol. 2011 Mar 8;21(5):406-12
pubmed: 21353562
Cell Mol Life Sci. 2011 Jan;68(2):243-74
pubmed: 20927566
Nucleic Acids Res. 2012 Oct;40(19):9691-704
pubmed: 22855560
Nat Methods. 2013 Dec;10(12):1213-8
pubmed: 24097267
PLoS One. 2008;3(11):e3647
pubmed: 18985154
Genome Biol. 2008;9(9):R137
pubmed: 18798982
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Nature. 2018 Mar 22;555(7697):538-542
pubmed: 29539636
Sci Rep. 2016 Oct 06;6:34808
pubmed: 27708426
Nat Rev Genet. 2011 Jul 12;12(8):554-64
pubmed: 21747402
Development. 2016 Oct 15;143(20):3723-3732
pubmed: 27802137
Exp Cell Res. 2014 Feb 1;321(1):47-57
pubmed: 24157250
Cell Rep. 2017 Jan 3;18(1):287-296
pubmed: 28052257
PLoS Biol. 2008 Feb;6(2):e27
pubmed: 18271625
Nature. 2008 Nov 20;456(7220):400-3
pubmed: 18931655
Phys Biol. 2011 Aug;8(4):044001
pubmed: 21666293
Curr Biol. 2014 Jun 16;24(12):1341-1346
pubmed: 24909324
Genome Res. 2017 Jan;27(1):64-74
pubmed: 27979994
Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21330-5
pubmed: 23236164
Nature. 1989 Aug 3;340(6232):363-7
pubmed: 2502714
Nature. 2008 Jan 31;451(7178):535-40
pubmed: 18172436
Protein Eng. 2001 Aug;14(8):529-32
pubmed: 11579220
Sci Rep. 2016 Aug 16;6:31437
pubmed: 27527579
Genome Res. 2015 Nov;25(11):1703-14
pubmed: 26335633