Bacterial arginine kinases have a highly skewed distribution within the proteobacteria.


Journal

Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology
ISSN: 1879-1107
Titre abrégé: Comp Biochem Physiol B Biochem Mol Biol
Pays: England
ID NLM: 9516061

Informations de publication

Date de publication:
Jul 2019
Historique:
received: 20 02 2019
revised: 03 04 2019
accepted: 05 04 2019
pubmed: 14 4 2019
medline: 21 6 2019
entrez: 14 4 2019
Statut: ppublish

Résumé

Phosphagen kinases (PKs) are known to be distributed throughout the animal kingdom, but have recently been discovered in some protozoan and bacterial species. A recent search of the available bacterial genomes revealed 49 unique sequences that appear to code for an arginine kinase (AK). The distribution of sequences was highly skewed with thirty nine out the forty nine sequences being found in six Proteobacteria classes (α, β, δ, γ, ε, and ζ) which represented 46.6% of the 61,335 bacterial genomes available at JGI-IMG/M website. Moreover, twenty one of the unique and metagenome bAK sequences identified were from δ-Proteobacteria despite these representing only 0.88% of the total genomes available. Phylogenetic analyses revealed that the bacterial AK sequences were interpersed between basal species such as cnidarians, sponges and protozoa, displaying an unstable clustering that was dependent upon the parameters chosen for phylogenetic analysis. Three of these putative bacterial AK genes were cloned into the pET45 expression vector, expressed, and biochemically confirmed to be capable of phosphorylating arginine using ATP. Results of the kinetic analyses of the putative bAKs from Ahrensia, D. autotrophicum, and O. profundus show that the catalytic efficiencies with respect to arginine for each enzyme, measured at 10

Identifiants

pubmed: 30980894
pii: S1096-4959(19)30083-1
doi: 10.1016/j.cbpb.2019.04.001
pii:
doi:

Substances chimiques

Bacterial Proteins 0
Arginine Kinase EC 2.7.3.3

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

60-71

Informations de copyright

Copyright © 2019 Elsevier Inc. All rights reserved.

Auteurs

Dean Fraga (D)

Program in Biochemistry and Molecular Biology, The College of Wooster, Wooster, OH 44691, United States of America; Department of Biology, The College of Wooster, Wooster, OH 44691, United States of America. Electronic address: dfraga@wooster.edu.

Katie Stock (K)

Program in Biochemistry and Molecular Biology, The College of Wooster, Wooster, OH 44691, United States of America.

Manish Aryal (M)

Program in Biochemistry and Molecular Biology, The College of Wooster, Wooster, OH 44691, United States of America.

Christopher Demoll (C)

Program in Biochemistry and Molecular Biology, The College of Wooster, Wooster, OH 44691, United States of America.

Lindsay Fannin (L)

Program in Biochemistry and Molecular Biology, The College of Wooster, Wooster, OH 44691, United States of America.

Mark J Snider (MJ)

Program in Biochemistry and Molecular Biology, The College of Wooster, Wooster, OH 44691, United States of America; Department of Chemistry, The College of Wooster, Wooster, OH 44691, United States of America.

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Classifications MeSH