Uncultured Microbial Phyla Suggest Mechanisms for Multi-Thousand-Year Subsistence in Baltic Sea Sediments.
deep subsurface
enzyme assays
low energy
marine sediments
metabolomics
metatranscriptomics
single-cell genomics
subsistence
Journal
mBio
ISSN: 2150-7511
Titre abrégé: mBio
Pays: United States
ID NLM: 101519231
Informations de publication
Date de publication:
16 04 2019
16 04 2019
Historique:
entrez:
18
4
2019
pubmed:
18
4
2019
medline:
25
6
2019
Statut:
epublish
Résumé
Energy-starved microbes in deep marine sediments subsist at near-zero growth for thousands of years, yet the mechanisms for their subsistence are unknown because no model strains have been cultivated from most of these groups. We investigated Baltic Sea sediments with single-cell genomics, metabolomics, metatranscriptomics, and enzyme assays to identify possible subsistence mechanisms employed by uncultured
Identifiants
pubmed: 30992358
pii: mBio.02376-18
doi: 10.1128/mBio.02376-18
pmc: PMC6469976
pii:
doi:
Substances chimiques
RNA, Ribosomal, 16S
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Informations de copyright
Copyright © 2019 Bird et al.
Références
Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16213-6
pubmed: 22927371
Nat Rev Microbiol. 2018 Nov;16(11):671-683
pubmed: 29967420
J Bacteriol. 2007 Jun;189(11):4299-304
pubmed: 17400742
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
FEMS Microbiol Ecol. 2017 Mar 1;93(3):
pubmed: 28104666
Anal Chem. 2010 Apr 15;82(8):3212-21
pubmed: 20349993
Nat Microbiol. 2016 Apr 11;1:16048
pubmed: 27572647
Annu Rev Microbiol. 2004;58:43-73
pubmed: 15487929
ISME J. 2014 Jul;8(7):1452-63
pubmed: 24621521
ISME J. 2016 Feb;10(2):273-86
pubmed: 26090992
J Mol Biol. 2009 Aug 14;391(2):498-507
pubmed: 19500592
Anal Chem. 2010 Dec 1;82(23):9818-26
pubmed: 21049934
ISME J. 2008 Jan;2(1):3-18
pubmed: 18180743
Proc Natl Acad Sci U S A. 2008 Jul 29;105(30):10583-8
pubmed: 18650394
Microbiol Mol Biol Rev. 2011 Jun;75(2):361-422
pubmed: 21646433
Nat Biotechnol. 2012 Oct;30(10):918-20
pubmed: 23051804
J Biol Chem. 1961 Jul;236:2039-42
pubmed: 13725477
Sci Rep. 2017 Jul 18;7(1):5680
pubmed: 28720809
Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):2940-2945
pubmed: 28242677
Environ Microbiol Rep. 2017 Oct;9(5):528-536
pubmed: 28836742
Bioinformatics. 2014 May 1;30(9):1236-40
pubmed: 24451626
Nucleic Acids Res. 2015 Aug 18;43(14):6761-71
pubmed: 26150420
Proc Natl Acad Sci U S A. 2006 Dec 19;103(51):19302-7
pubmed: 17159141
Geobiology. 2019 Jan;17(1):43-59
pubmed: 30248245
Front Microbiol. 2015 Jul 15;6:718
pubmed: 26236299
PLoS Genet. 2010 Sep 09;6(9):e1001105
pubmed: 20838591
Nature. 2013 Jul 25;499(7459):431-7
pubmed: 23851394
Front Microbiol. 2017 Jan 31;8:31
pubmed: 28197128
mBio. 2012 Oct 30;3(6):
pubmed: 23111869
PLoS One. 2014 Apr 09;9(4):e93597
pubmed: 24718614
DNA Repair (Amst). 2014 Nov;23:27-32
pubmed: 25283336
ISME J. 2018 Dec;12(12):2823-2834
pubmed: 30022156
Front Microbiol. 2015 Aug 26;6:872
pubmed: 26379647
Nucleic Acids Res. 2007;35(21):7188-96
pubmed: 17947321
FEMS Microbiol Ecol. 2013 Sep;85(3):578-92
pubmed: 23656380
PLoS One. 2013;8(3):e59361
pubmed: 23555659
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Mol Gen Genet. 1974;133(4):299-316
pubmed: 4373646
Microbiology. 2003 Sep;149(Pt 9):2357-2371
pubmed: 12949162
Mar Genomics. 2018 Feb;37:58-68
pubmed: 28811148
J Comput Biol. 2012 May;19(5):455-77
pubmed: 22506599
Mol Cell Proteomics. 2009 Feb;8(2):215-25
pubmed: 18723842
Nature. 2013 Apr 11;496(7444):215-8
pubmed: 23535597
Science. 2014 Jun 6;344(6188):1092-3
pubmed: 24904143
Genome Res. 2015 Jul;25(7):1043-55
pubmed: 25977477
Nat Commun. 2013;4:1854
pubmed: 23673639
Mol Cell Biol. 2007 Feb;27(4):1505-15
pubmed: 17145780
Front Physiol. 2012 Jul 06;3:256
pubmed: 22783207
Nature. 2016 May 30;534(7607):417-20
pubmed: 27281193
FEMS Microbiol Rev. 2014 May;38(3):449-72
pubmed: 24118021
FEMS Microbiol Rev. 2011 Jan;35(1):68-86
pubmed: 20584082
Ann Rev Mar Sci. 2016;8:311-32
pubmed: 26209150
Nat Microbiol. 2018 Jan;3(1):32-37
pubmed: 29062087
Nat Protoc. 2014 May;9(5):1038-48
pubmed: 24722403
Nature. 2013 Jul 11;499(7457):205-8
pubmed: 23760485
Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11497-502
pubmed: 25049407
J Bacteriol. 2011 May;193(9):2197-207
pubmed: 21357483
Biochim Biophys Acta. 2016 Oct;1864(10):1372-401
pubmed: 27296530
J Bacteriol. 2013 Apr;195(8):1689-96
pubmed: 23378508
PeerJ. 2015 Oct 08;3:e1319
pubmed: 26500826
Bioinformatics. 2014 Jul 15;30(14):2068-9
pubmed: 24642063
J Vis Exp. 2013 Nov 15;(81):e50961
pubmed: 24299913
BMC Biol. 2014 Nov 12;12:87
pubmed: 25387460
Mar Genomics. 2015 Dec;24 Pt 3:185-96
pubmed: 26452301