Comprehensive Characterization of the Human Endogenous Retrovirus HERV-K(HML-6) Group: Overview of Structure, Phylogeny, and Contribution to the Human Genome.
HERV
HERV-K-MEL
HML-6
RetroTector
bioinformatics
endogenous retrovirus
Journal
Journal of virology
ISSN: 1098-5514
Titre abrégé: J Virol
Pays: United States
ID NLM: 0113724
Informations de publication
Date de publication:
15 08 2019
15 08 2019
Historique:
received:
23
01
2019
accepted:
27
05
2019
pubmed:
7
6
2019
medline:
4
6
2020
entrez:
7
6
2019
Statut:
epublish
Résumé
Eight percent of the human genome is composed of human endogenous retroviruses (HERVs), remnants of ancestral germ line infections by exogenous retroviruses, which have been vertically transmitted as Mendelian characters. The HML-6 group, a member of the class II betaretrovirus-like viruses, includes several proviral loci with an increased transcriptional activity in cancer and at least two elements that are known for retaining an intact open reading frame and for encoding small proteins such as ERVK3-1, which is expressed in various healthy tissues, and HERV-K-MEL, a small Env peptide expressed in samples of cutaneous and ocular melanoma but not in normal tissues.
Identifiants
pubmed: 31167914
pii: JVI.00110-19
doi: 10.1128/JVI.00110-19
pmc: PMC6675890
pii:
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Informations de copyright
Copyright © 2019 American Society for Microbiology.
Références
Annu Rev Genet. 2008;42:709-32
pubmed: 18694346
Nucleic Acids Res. 2016 Jan 4;44(D1):D81-9
pubmed: 26612867
J Immunol. 2014 Feb 15;192(4):1343-9
pubmed: 24511094
Genome Res. 2012 Sep;22(9):1760-74
pubmed: 22955987
J Mol Evol. 2003 Dec;57(6):642-9
pubmed: 14745533
Viruses. 2017 Jun 27;9(7):
pubmed: 28653997
Mob DNA. 2017 Nov 02;8:15
pubmed: 29118853
Genome Biol. 2006;7(9):R86
pubmed: 17005047
Gene. 2000 Apr 18;247(1-2):265-77
pubmed: 10773466
Gene. 2009 Dec 15;448(2):115-23
pubmed: 19540319
Nat Methods. 2012 Jul 30;9(8):772
pubmed: 22847109
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):12992-7
pubmed: 20615953
Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10254-60
pubmed: 10468595
J Virol. 1996 Jan;70(1):188-98
pubmed: 8523525
Nature. 2000 Feb 17;403(6771):785-9
pubmed: 10693809
Immunogenetics. 2004 Aug;56(5):321-32
pubmed: 15309346
Microbiol Mol Biol Rev. 2008 Mar;72(1):157-96, table of contents
pubmed: 18322038
Retrovirology. 2016 Sep 09;13(1):67
pubmed: 27613107
Cell Mol Life Sci. 2008 Nov;65(21):3348-65
pubmed: 18818874
PLoS One. 2009;4(4):e5179
pubmed: 19365549
Sci Rep. 2017 Dec;7(1):134
pubmed: 28273935
J Virol. 1999 Nov;73(11):9496-507
pubmed: 10516058
Tanpakushitsu Kakusan Koso. 2005 Feb;50(2):162-8
pubmed: 15704464
J Virol. 2004 Aug;78(16):8788-98
pubmed: 15280487
Retrovirology. 2016 Jan 22;13:7
pubmed: 26800882
Science. 2016 Mar 4;351(6277):1083-7
pubmed: 26941318
J Virol. 2004 Oct;78(19):10310-9
pubmed: 15367597
Nucleic Acids Res. 2006 Mar 23;34(6):1692-9
pubmed: 16556910
Exp Cell Res. 2011 Aug 1;317(13):1851-9
pubmed: 21624362
Oncogene. 2005 Apr 28;24(19):3223-8
pubmed: 15735668
Retrovirology. 2005 Aug 10;2:50
pubmed: 16092962
Annu Rev Genomics Hum Genet. 2006;7:149-73
pubmed: 16722807
J Virol. 2008 Jul;82(13):6667-77
pubmed: 18448532
Oncogene. 2000 Sep 7;19(38):4328-36
pubmed: 10980608
J Virol. 2005 Dec;79(23):14737-47
pubmed: 16282474
Nucleic Acids Res. 2007;35(15):4964-76
pubmed: 17636050
Bioinformatics. 2012 Jun 15;28(12):1647-9
pubmed: 22543367
Front Microbiol. 2018 Mar 14;9:462
pubmed: 29593697
Mol Biol Evol. 2013 Dec;30(12):2725-9
pubmed: 24132122
Syst Biol. 2003 Oct;52(5):696-704
pubmed: 14530136
J Virol. 2008 Feb;82(4):1808-18
pubmed: 18077721
Retrovirology. 2011 Nov 08;8:90
pubmed: 22067224
Database (Oxford). 2016 Jun 23;2016:
pubmed: 27337980
Virology. 1999 Mar 30;256(1):22-35
pubmed: 10087223
Front Immunol. 2018 Sep 10;9:2039
pubmed: 30250470
Nature. 2015 Jun 11;522(7555):221-5
pubmed: 25896322
Nucleic Acids Res. 2017 Jan 4;45(D1):D200-D203
pubmed: 27899674
J Virol. 2005 Jan;79(1):341-52
pubmed: 15596828
J Virol. 2000 Apr;74(8):3715-30
pubmed: 10729147
J Gen Virol. 1997 Jul;78 ( Pt 7):1731-44
pubmed: 9225050
Cancer Res. 2002 Oct 1;62(19):5510-6
pubmed: 12359761
J Virol. 2000 Apr;74(7):3321-9
pubmed: 10708449
Virology. 2004 Apr 25;322(1):190-8
pubmed: 15063128
J Virol. 1993 Nov;67(11):6778-87
pubmed: 7692084