Newly emerged African swine fever virus strain Belgium/Etalle/wb/2018: Complete genomic sequence and comparative analysis with reference p72 genotype II strains.
African swine fever virus
Belgium
emergence
whole genome sequence
wild boar
Journal
Transboundary and emerging diseases
ISSN: 1865-1682
Titre abrégé: Transbound Emerg Dis
Pays: Germany
ID NLM: 101319538
Informations de publication
Date de publication:
Nov 2019
Nov 2019
Historique:
received:
20
02
2019
revised:
25
06
2019
accepted:
30
06
2019
pubmed:
25
7
2019
medline:
14
2
2020
entrez:
24
7
2019
Statut:
ppublish
Résumé
In a new example of pathogens hopscotching the globe, African swine fever virus hit north-western Europe's wildlife in summer 2018, marking a further spread of a disease that had invaded Central and Eastern Europe recently. The complete genomic sequence of the Belgium/Etalle/wb/2018 virus is reported, with the hope it will provide a valuable tool for tracing geographical spread and biologic evolution of the virus.
Banques de données
GENBANK
['MH998358', 'MH998359', '#MK543947', 'FR682468', 'KP843857', 'MH681419', 'MK128995']
Types de publication
Comparative Study
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
2566-2591Subventions
Organisme : Public Service of Wallonia
Organisme : University of Liège's Research Council
Informations de copyright
© 2019 Blackwell Verlag GmbH.
Références
Alonso, C., Borca, M., Dixon, L., Revilla, Y., Rodriguez, F., & Escribano, J. M. I. C. T. V. (2018). Report Consortium. ICTV virus taxonomy profile: Asfarviridae. Journal of General Virology, 99, 613-614. https://doi.org/10.1099/jgv.0.001049
Bastos, A., Penrith, M., Crucière, C., Edrich, J., Hutchings, G., Roger, F., … Thomson, G. (2003). Genotyping field strains of African swine fever virus by partial p72 gene characterisation. Archives of Virology, 148, 693-706. https://doi.org/10.1007/s00705-002-0946-8
Borca, M. V., Kutish, G. F., Afonso, C. L., Irusta, P., Carrillo, C., Brun, A., … Rock, D. L. (1994). An African swine fever virus gene with similarity to the T-lymphocyte surface-antigen Cd2 mediates hemadsorption. Virology, 199, 463-468. https://doi.org/10.1006/viro.1994.1146
Dixon, L. K., Chapman, D. A., Netherton, C. L., & Upton, C. (2013). African swine fever virus replication and genomics. Virus Research, 173, 3-14. https://doi.org/10.1016/j.virusres.2012.10.020
EFSA Panel on Animal Health and Welfare (2014). Scientific Opinion on African swine fever. EFSA Journal, 12(3628):1-77.
Gallardo, C., Fernandez-Pinero, J., Pelayo, V., Gazaev, I., Markowska-Daniel, I., Pridotkas, G., … Arias, M. (2014). Genetic variation among African swine fever genotype II viruses, eastern and central Europe. Emerging Infectious Diseases, 20, 1544-1547. https://doi.org/10.3201/eid2009.140554
Garigliany, M., Desmecht, D., Tignon, M., Cassart, D., Lesenfant, C., Paternostre, J., … Linden, A. (2019). Phylogeographic analysis of African swine fever virus, Western Europe, 2018. Emerging Infectious Diseases, 25, 184-186. https://doi.org/10.3201/eid2501.181535
Garigliany, M., Taminiau, B., El Agrebi, N., Cadar, D., Gilliaux, G., Hue, M., … Saegerman, C. (2017). Moku virus in invasive asian hornets, Belgium, 2016. Emerging Infectious Diseases, 23, 2109-2112. https://doi.org/10.3201/eid2312.171080
Ge, S., Li, J., Fan, X., Liu, F., Li, L., Wang, Q., … Wang, Z. (2018). Molecular characterization of African swine fever virus, China, 2018. Emerging Infectious Diseases, 24, 2131-2133. https://doi.org/10.3201/eid2411.181274
Iglesias, I., Rodriguez, A., Feliziani, F., Rolesu, S., & de la Torre, A. (2017). Spatio-temporal analysis of African Swine Fever in Sardinia (2012-2014): Trends in domestic pigs and wild boar. Transboundary and Emerging Diseases, 64, 656-662. https://doi.org/10.1111/tbed.12408
Linden, A., Licoppe, A., Volpe, R., Paternostre, J., Lesenfants, C., Cassart, D., … Cay, A. B. (2019). Summer 2018: African swine fever virus hits north-western Europe. Transboundary and Emerging Diseases, 66, 54-55. https://doi.org/10.1111/tbed.13047
Ministry of Defence and Armed Forces of the Czech Republic (2018). Exercises 2018, CBRN EOD II-LIVEX 2018-11th-16th March 2018. http://www.army.cz/en/armed-forces/exercises/exercises-2018-142700/, accessed Feb. 22th, 2019.
Rodríguez, J. M., Yáñez, R. J., Almazán, F., Viñuela, E., & Rodriguez, J. F. (1993). African swine fever virus encodes a Cd2 homolog responsible for the adhesion of erythrocytes to infected-cells. Journal of Virology, 67, 5312-5320.
Sanchez-Vizcaino, J., Mur, L., & Martinez-Lopez, B. (2012). African swine fever: An epidemiological update. Transboundary and Emerging Diseases, 59(suppl 1), 27-35. https://doi.org/10.1111/j.1865-1682.2011.01293.x
Sievers, F., Wilm, A., Dineen, D., Gibson, T. J., Karplus, K., Li, W., … Higgins, D. J. (2011). Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Molecular Systems Biology, 117, 539. https://doi.org/10.1038/msb.2011.75
World Organisation for Animal Health (2013). African swine fever. In: Manual of diagnostic tests and vaccines for terrestrial animals; Vol 2, Chapter 2.8.1 [cited 2014 Jan 8]. http://www.oie.int/internationalstandard-setting/terrestrial-manual/access-online/
Yanez, R. J., Rodriguez, J. M., Nogal, M. L., Yuste, L., Enriquez, C., Rodriguez, J. F., & Vinuela, E. (1995). Analysis of the complete nucleotide sequence of African swine fever virus. Virology, 208, 249-278. https://doi.org/10.1006/viro.1995.1149
Zhou, X., Li, N., Luo, Y., Liu, Y., Miao, F., Chen, T., … Hu, R. (2018). Emergence of African swine fever in China, 2018. Transboundary and Emerging Diseases, 65, 1482-1484. https://doi.org/10.1111/tbed.12989