Self-Assembly of DNA Origami Heterodimers in High Yields and Analysis of the Involved Mechanisms.
DNA molecular devices
DNA nanotechnology
DNA origami
agarose gel electrophoresis
Journal
Small (Weinheim an der Bergstrasse, Germany)
ISSN: 1613-6829
Titre abrégé: Small
Pays: Germany
ID NLM: 101235338
Informations de publication
Date de publication:
12 2019
12 2019
Historique:
received:
07
06
2019
revised:
30
09
2019
pubmed:
23
11
2019
medline:
6
10
2020
entrez:
23
11
2019
Statut:
ppublish
Résumé
Efficient fabrication of structurally and functionally diverse nanomolecular devices and machines by organizing separately prepared DNA origami building blocks into a larger structure is limited by origami attachment yields. A general method that enables attachment of origami building blocks using 'sticky ends' at very high yields is demonstrated. Two different rectangular origami monomers are purified using agarose gel electrophoresis conducted in solute containing 100 × 10
Identifiants
pubmed: 31755230
doi: 10.1002/smll.201902979
doi:
Substances chimiques
Polyethylene Glycols
3WJQ0SDW1A
DNA
9007-49-2
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
e1902979Informations de copyright
© 2019 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
Références
P. W. Rothemund, Nature 2006, 440, 297.
N. C. Seeman, O. Gang, MRS Bull. 2017, 42, 904.
N. Liu, T. Liedl, Chem. Rev. 2018, 118, 3032.
M. R. Jones, N. C. Seeman, C. A. Mirkin, Science 2015, 347, 1260901.
F. Hong, F. Zhang, Y. Liu, H. Yan, Chem. Rev. 2017, 117, 12584.
W. Pfeifer, B. Sacca, ChemBioChem 2016, 17, 1063.
M. Pilo-Pais, S. Goldberg, E. Samano, T. H. Labean, G. Finkelstein, Nano Lett. 2011, 11, 3489.
S. Pal, Z. Deng, H. Wang, S. Zou, Y. Liu, H. Yan, J. Am. Chem. Soc. 2011, 133, 17606.
B. Ding, Z. Deng, H. Yan, S. Cabrini, R. N. Zuckermann, J. Bokor, J. Am. Chem. Soc. 2010, 132, 3248.
H. Bui, C. Onodera, C. Kidwell, Y. Tan, E. Graugnard, W. Kuang, J. Lee, W. B. Knowlton, B. Yurke, W. L. Hughes, Nano Lett. 2010, 10, 3367.
S. Pal, Z. Deng, B. Ding, H. Yan, Y. Liu, Angew. Chem., Int. Ed. 2010, 49, 2700.
R. Schreiber, J. Do, E. M. Roller, T. Zhang, V. J. Schuller, P. C. Nickels, J. Feldmann, T. Liedl, Nat. Nanotechnol. 2014, 9, 74.
Z. Zhao, J. Fu, S. Dhakal, A. Johnson-Buck, M. Liu, T. Zhang, N. W. Woodbury, Y. Liu, N. G. Walter, H. Yan, Nat. Commun. 2016, 7, 10619.
B. Sacca, R. Meyer, M. Erkelenz, K. Kiko, A. Arndt, H. Schroeder, K. S. Rabe, C. M. Niemeyer, Angew. Chem., Int. Ed. 2010, 49, 9378.
K. Numajiri, M. Kimura, A. Kuzuya, M. Komiyama, Chem. Commun. 2010, 46, 5127.
N. V. Voigt, T. Torring, A. Rotaru, M. F. Jacobsen, J. B. Ravnsbaek, R. Subramani, W. Mamdouh, J. Kjems, A. Mokhir, F. Besenbacher, K. V. Gothelf, Nat. Nanotechnol. 2010, 5, 200.
H. T. Maune, S. P. Han, R. D. Barish, M. Bockrath, W. A. Goddard III, P. W. Rothemund, E. Winfree, Nat. Nanotechnol. 2010, 5, 61.
A. P. Eskelinen, A. Kuzyk, T. K. Kaltiaisenaho, M. Y. Timmermans, A. G. Nasibulin, E. I. Kauppinen, P. Torma, Small 2011, 7, 746.
J. Zessin, F. Fischer, A. Heerwig, A. Kick, S. Boye, M. Stamm, A. Kiriy, M. Mertig, Nano Lett. 2017, 17, 5163.
H. Gu, J. Chao, S. J. Xiao, N. C. Seeman, Nature 2010, 465, 202.
S. F. Wickham, M. Endo, Y. Katsuda, K. Hidaka, J. Bath, H. Sugiyama, A. J. Turberfield, Nat. Nanotechnol. 2011, 6, 166.
S. F. Wickham, J. Bath, Y. Katsuda, M. Endo, K. Hidaka, H. Sugiyama, A. J. Turberfield, Nat. Nanotechnol. 2012, 7, 169.
T. E. Tomov, R. Tsukanov, M. Liber, R. Masoud, N. Plavner, E. Nir, J. Am. Chem. Soc. 2013, 135, 11935.
T. E. Tomov, R. Tsukanov, Y. Glick, Y. Berger, M. Liber, D. Avrahami, D. Gerber, E. Nir, ACS Nano 2017, 11, 4002.
E. Kopperger, J. List, S. Madhira, F. Rothfischer, D. C. Lamb, F. C. Simmel, Science 2018, 359, 296.
J. J. Funke, P. Ketterer, C. Lieleg, S. Schunter, P. Korber, H. Dietz, Sci. Adv. 2016, 2, e1600974.
P. C. Nickels, B. Wunsch, P. Holzmeister, W. Bae, L. M. Kneer, D. Grohmann, P. Tinnefeld, T. Liedl, Science 2016, 354, 305.
S. M. Douglas, I. Bachelet, G. M. Church, Science 2012, 335, 831.
A. J. Thubagere, W. Li, R. F. Johnson, Z. Chen, S. Doroudi, Y. L. Lee, G. Izatt, S. Wittman, N. Srinivas, D. Woods, E. Winfree, L. Qian, Science 2017, 357, eaan6558.
M. Endo, Y. Katsuda, K. Hidaka, H. Sugiyama, Angew. Chem., Int. Ed. 2010, 49, 9412.
A. N. Marchi, I. Saaem, B. N. Vogen, S. Brown, T. H. LaBean, Nano Lett. 2014, 14, 5740.
W. Liu, H. Zhong, R. Wang, N. C. Seeman, Angew. Chem., Int. Ed. 2011, 50, 264.
R. Jungmann, M. Scheible, A. Kuzyk, G. Pardatscher, C. E. Castro, F. C. Simmel, Nanotechnology 2011, 22, 275301.
Z. Li, L. Wang, H. Yan, Y. Liu, Langmuir 2012, 28, 1959.
Z. Li, M. Liu, L. Wang, J. Nangreave, H. Yan, Y. Liu, J. Am. Chem. Soc. 2010, 132, 13545.
K. F. Wagenbauer, C. Sigl, H. Dietz, Nature 2017, 552, 78.
S. M. Douglas, H. Dietz, T. Liedl, B. Hogberg, F. Graf, W. M. Shih, Nature 2009, 459, 414.
R. Schreiber, S. Kempter, S. Holler, V. Schuller, D. Schiffels, S. S. Simmel, P. C. Nickels, T. Liedl, Small 2011, 7, 1795.
J. Fern, J. Lu, R. Schulman, ACS Nano 2016, 10, 1836.
J. Zenk, C. Tuntivate, R. Schulman, J. Am. Chem. Soc. 2016, 138, 3346.
M. Liber, T. E. Tomov, R. Tsukanov, Y. Berger, E. Nir, Small 2015, 11, 568.
M. Liber, T. E. Tomov, R. Tsukanov, Y. Berger, M. Popov, D. C. Khara, E. Nir, Small 2018, 14, 1800218.
T. C. Wu, M. Rahman, M. L. Norton, Acc. Chem. Res. 2014, 47, 1750.
R. Wang, K. Gorday, C. Nuckolls, S. J. Wind, Chem. Commun. 2016, 52, 1610.
S. Woo, P. W. Rothemund, Nat. Chem. 2011, 3, 620.
T. Gerling, K. F. Wagenbauer, A. M. Neuner, H. Dietz, Science 2015, 347, 1446.
P. Ketterer, E. M. Willner, H. Dietz, Sci. Adv. 2016, 2, e1501209.
J. Ye, S. Helmi, J. Teske, R. Seidel, Nano Lett. 2019, 19, 2707.
A. Rajendran, M. Endo, Y. Katsuda, K. Hidaka, H. Sugiyama, ACS Nano 2011, 5, 665.
M. Endo, T. Sugita, Y. Katsuda, K. Hidaka, H. Sugiyama, Chem.-Eur. J. 2010, 16, 5362.
M. Endo, T. Sugita, A. Rajendran, Y. Katsuda, T. Emura, K. Hidaka, H. Sugiyama, Chem. Commun. 2011, 47, 3213.
G. Tikhomirov, P. Petersen, L. Qian, Nat. Nanotechnol. 2017, 12, 251.
G. Tikhomirov, P. Petersen, L. Qian, Nature 2017, 552, 67.
Z. Zhao, Y. Liu, H. Yan, Nano Lett. 2011, 11, 2997.
K. N. Kim, K. Sarveswaran, L. Mark, M. Lieberman, Soft Matter 2011, 7, 4636.
A. Shaw, E. Benson, B. Hogberg, ACS Nano 2015, 9, 4968.
E. Stahl, T. G. Martin, F. Praetorius, H. Dietz, Angew. Chem., Int. Ed. 2014, 53, 12735.
J. Lipfert, S. Doniach, R. Das, D. Herschlag, Annu. Rev. Biochem., 2014, 83, 813.
W. Humphrey, A. Dalke, K. Schulten, J. Mol. Graphics 1996, 14, 33.
F. Kilchherr, C. Wachauf, B. Pelz, M. Rief, M. Zacharias, H. Dietz, Science 2016, 353, aaf5508.
C. Maffeo, B. Luan, A. Aksimentiev, Nucleic Acids Res. 2012, 40, 3812.
R. M. Dirks, J. S. Bois, J. M. Schaeffer, E. Winfree, N. A. Pierce, SIAM Rev. 2007, 49, 65.