7-Deazaguanine modifications protect phage DNA from host restriction systems.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
29 11 2019
Historique:
received: 01 05 2019
accepted: 04 11 2019
entrez: 1 12 2019
pubmed: 1 12 2019
medline: 11 3 2020
Statut: epublish

Résumé

Genome modifications are central components of the continuous arms race between viruses and their hosts. The archaeosine base (G

Identifiants

pubmed: 31784519
doi: 10.1038/s41467-019-13384-y
pii: 10.1038/s41467-019-13384-y
pmc: PMC6884629
doi:

Substances chimiques

7-(aminomethyl)-7-deazaguanine 0
7-cyano-7-deazaguanine 0
Pyrimidinones 0
Pyrroles 0
Guanine 5Z93L87A1R
DNA 9007-49-2
DNA Restriction Enzymes EC 3.1.21.-
7-deazaguanine GPL8T5ZO3M

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

5442

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM070641
Pays : United States

Références

Biochemistry (Mosc). 2015 Oct;80(10):1373-86
pubmed: 26567582
Chembiochem. 2005 Nov;6(11):1926-39
pubmed: 16206323
J Biol Chem. 2010 Apr 23;285(17):12706-13
pubmed: 20129918
Nucleic Acids Res. 2010 Jul;38(12):3952-62
pubmed: 20194117
Nat Rev Microbiol. 2015 Nov;13(11):722-36
pubmed: 26411297
Annu Rev Microbiol. 2003;57:301-22
pubmed: 14527281
Bioorg Chem. 2012 Aug;43:15-25
pubmed: 22382038
Biomolecules. 2017 Apr 06;7(2):
pubmed: 28383498
Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4264-9
pubmed: 15767583
Nucleic Acids Res. 2005 Oct 07;33(17):5691-702
pubmed: 16214803
Bioinformatics. 2005 Apr 1;21(7):951-60
pubmed: 15531603
Proteins. 2008 Aug 15;72(3):1084-8
pubmed: 18491386
J Biol Chem. 2004 Feb 20;279(8):6280-5
pubmed: 14660578
Chembiochem. 2015 Oct 12;16(15):2225-36
pubmed: 26382079
Genome Announc. 2015 Jul 16;3(4):
pubmed: 26184932
ACS Chem Biol. 2012 Feb 17;7(2):300-5
pubmed: 22032275
Cell. 2003 Apr 18;113(2):171-82
pubmed: 12705866
J Virol Methods. 2014 Feb;196:152-6
pubmed: 24239631
Biochim Biophys Acta. 2015 Aug;1854(8):1019-37
pubmed: 25900361
Proc Natl Acad Sci U S A. 2016 Mar 15;113(11):E1452-9
pubmed: 26929322
Viruses. 2016 Mar 01;8(3):66
pubmed: 26938550
mBio. 2015 Jun 16;6(3):e00648
pubmed: 26081634
Arch Virol. 2016 Aug;161(8):2219-26
pubmed: 27231007
EMBO J. 2018 Sep 14;37(18):
pubmed: 30093495
J Bacteriol. 2011 Jan;193(2):551-62
pubmed: 21097633
Nat Rev Microbiol. 2013 Oct;11(10):675-87
pubmed: 23979432
Proteins. 2017 Jan;85(1):103-116
pubmed: 27802572
RNA Biol. 2017 Sep 2;14(9):1175-1184
pubmed: 27937735
J Bacteriol. 2008 Dec;190(24):7876-84
pubmed: 18931107
Biochemistry. 2003 May 13;42(18):5312-20
pubmed: 12731872
Front Microbiol. 2019 Mar 29;10:584
pubmed: 30984133
ACS Synth Biol. 2017 Jul 21;6(7):1351-1358
pubmed: 28324650
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Mol Microbiol. 2018 Nov;110(3):469-483
pubmed: 30159947
Annu Rev Virol. 2017 Sep 29;4(1):37-59
pubmed: 28749735
Viruses. 2014 Dec 19;6(12):5077-92
pubmed: 25533657
Drug Metab Dispos. 2010 May;38(5):789-800
pubmed: 20124396
Proc Natl Acad Sci U S A. 2011 May 3;108(18):7368-72
pubmed: 21502530
Nat Rev Microbiol. 2018 Jan;16(1):12-17
pubmed: 29062071
Bio Protoc. 2018 Jan 05;8(1):e2674
pubmed: 34179229
Nucleic Acids Res. 2018 Jan 4;46(D1):D477-D485
pubmed: 29106550
RNA Biol. 2019 Apr;16(4):504-517
pubmed: 30109815
Biomolecules. 2017 Feb 08;7(1):
pubmed: 28208705
Folia Microbiol (Praha). 2013 May;58(3):177-86
pubmed: 22993102
Bioengineered. 2014 Sep-Oct;5(5):300-4
pubmed: 25482231
Sci Rep. 2017 Aug 21;7(1):8348
pubmed: 28827753
Annu Rev Microbiol. 2014;68:357-76
pubmed: 25002089
Nucleic Acids Res. 1997 Sep 1;25(17):3389-402
pubmed: 9254694
ACS Chem Biol. 2017 Mar 17;12(3):844-851
pubmed: 28128549
Curr Opin Microbiol. 2005 Aug;8(4):473-9
pubmed: 15979388
Genome Announc. 2017 Jul 13;5(28):
pubmed: 28705957
Proc Natl Acad Sci U S A. 2018 Apr 03;115(14):E3116-E3125
pubmed: 29555775
Chem Rev. 2016 Oct 26;116(20):12655-12687
pubmed: 27319741
Curr Opin Plant Biol. 2002 Jun;5(3):244-9
pubmed: 11960743
Nat Rev Microbiol. 2010 May;8(5):317-27
pubmed: 20348932
Bioinformatics. 2017 Mar 1;33(5):784-786
pubmed: 28365761
Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45
pubmed: 26553804

Auteurs

Geoffrey Hutinet (G)

Department of Microbiology and Cell Science, University of Florida, Gainesville, FL, 32611, USA. ghutinet@ufl.edu.

Witold Kot (W)

Department of Environmental Science, Aarhus University, Roskilde, Denmark.

Liang Cui (L)

Singapore-MIT Alliance for Research and Technology, Antimicrobial Resistance Interdisciplinary Research Group, Campus for Research Excellence and Technological Enterprise, Singapore, 138602, Singapore.

Roman Hillebrand (R)

Department of Biological Engineering and Center for Environmental Health Sciences, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Nitto Denko Avecia, 125 Fortune Boulevard, Milford, MA, 01757, USA.

Seetharamsingh Balamkundu (S)

Singapore-MIT Alliance for Research and Technology, Antimicrobial Resistance Interdisciplinary Research Group, Campus for Research Excellence and Technological Enterprise, Singapore, 138602, Singapore.

Shanmugavel Gnanakalai (S)

Singapore-MIT Alliance for Research and Technology, Antimicrobial Resistance Interdisciplinary Research Group, Campus for Research Excellence and Technological Enterprise, Singapore, 138602, Singapore.

Ramesh Neelakandan (R)

Singapore-MIT Alliance for Research and Technology, Antimicrobial Resistance Interdisciplinary Research Group, Campus for Research Excellence and Technological Enterprise, Singapore, 138602, Singapore.

Alexander B Carstens (AB)

Department of Environmental Science, Aarhus University, Roskilde, Denmark.

Chuan Fa Lui (C)

School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore, 637551, Singapore.

Denise Tremblay (D)

Département de Biochimie, Microbiologie et de Bio-informatique, Faculté des Sciences et de Génie, Université Laval, Québec City, QC, G1V 0A6, Canada.
Félix d'Hérelle Reference Center for Bacterial Viruses and Groupe de Recherche en Écologie Buccale, Faculté de Médecine Dentaire, Université Laval, Québec City, QC, G1V 0A6, Canada.

Deborah Jacobs-Sera (D)

Pittsburgh Bacteriophage Institute and Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, 15260, USA.

Mandana Sassanfar (M)

Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.

Yan-Jiun Lee (YJ)

Research Department, New England Biolabs, Ipswich, MA, 01938, USA.

Peter Weigele (P)

Research Department, New England Biolabs, Ipswich, MA, 01938, USA.

Sylvain Moineau (S)

Département de Biochimie, Microbiologie et de Bio-informatique, Faculté des Sciences et de Génie, Université Laval, Québec City, QC, G1V 0A6, Canada.
Félix d'Hérelle Reference Center for Bacterial Viruses and Groupe de Recherche en Écologie Buccale, Faculté de Médecine Dentaire, Université Laval, Québec City, QC, G1V 0A6, Canada.

Graham F Hatfull (GF)

Pittsburgh Bacteriophage Institute and Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, 15260, USA.

Peter C Dedon (PC)

Singapore-MIT Alliance for Research and Technology, Antimicrobial Resistance Interdisciplinary Research Group, Campus for Research Excellence and Technological Enterprise, Singapore, 138602, Singapore.
Department of Biological Engineering and Center for Environmental Health Sciences, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.

Lars H Hansen (LH)

Department of Environmental Science, Aarhus University, Roskilde, Denmark.

Valérie de Crécy-Lagard (V)

Department of Microbiology and Cell Science, University of Florida, Gainesville, FL, 32611, USA. vcrecy@ufl.edu.
University of Florida, Genetics Institute, Gainesville, Florida, 32610, USA. vcrecy@ufl.edu.

Articles similaires

Genome, Viral Ralstonia Composting Solanum lycopersicum Bacteriophages
Humans Melanoma Skin Neoplasms Antineoplastic Combined Chemotherapy Protocols Randomized Controlled Trials as Topic

Conservation of the cooling agent binding pocket within the TRPM subfamily.

Kate Huffer, Matthew C S Denley, Elisabeth V Oskoui et al.
1.00
TRPM Cation Channels Animals Binding Sites Mice Pyrimidinones
Host Specificity Bacteriophages Genomics Algorithms Escherichia coli

Classifications MeSH