Rapid customization of Solanaceae fruit crops for urban agriculture.
Journal
Nature biotechnology
ISSN: 1546-1696
Titre abrégé: Nat Biotechnol
Pays: United States
ID NLM: 9604648
Informations de publication
Date de publication:
02 2020
02 2020
Historique:
received:
21
08
2019
accepted:
15
11
2019
pubmed:
25
12
2019
medline:
10
4
2020
entrez:
25
12
2019
Statut:
ppublish
Résumé
Cultivation of crops in urban environments might reduce the environmental impact of food production
Identifiants
pubmed: 31873217
doi: 10.1038/s41587-019-0361-2
pii: 10.1038/s41587-019-0361-2
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
182-188Commentaires et corrections
Type : CommentIn
Références
Benke, K. & Tomkins, B. Future food-production systems: vertical farming and controlled-environment agriculture. Sustain. Sci. Pract. Policy 13, 13–26 (2017).
Pearson, L. J., Pearson, L. & Pearson, C. J. Sustainable urban agriculture: stocktake and opportunities. Int. J. Agric. Sustain. 8, 7–19 (2010).
doi: 10.3763/ijas.2009.0468
Martellozzo, F. et al. Urban agriculture: a global analysis of the space constraint to meet urban vegetable demand. Environ. Res. Lett. 9, 064025 (2014).
doi: 10.1088/1748-9326/9/6/064025
Banerjee, C. & Adenaeuer, L. Up, up and away! The economics of vertical farming. J. Agric. Stud. 2, 40–60 (2014).
doi: 10.5296/jas.v2i1.4526
Touliatos, D., Dodd, I. C. & McAinsh, M. Vertical farming increases lettuce yield per unit area compared to conventional horizontal hydroponics. Food Energy Secur. 5, 184–191 (2016).
doi: 10.1002/fes3.83
Pnueli, L. et al. The SELF-PRUNING gene of tomato regulates vegetative to reproductive switching of sympodial meristems and is the ortholog of CEN and TFL1. Development 125, 1979–1989 (1998).
pubmed: 9570763
Soyk, S. et al. Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato. Nat. Genet. 49, 162–168 (2017).
doi: 10.1038/ng.3733
Xu, C. et al. A cascade of arabinosyltransferases controls shoot meristem size in tomato. Nat. Genet. 47, 784–792 (2015).
doi: 10.1038/ng.3309
Menda, N., Semel, Y., Peled, D., Eshed, Y. & Zamir, D. In silico screening of a saturated mutation library of tomato. Plant J. 38, 861–872 (2004).
doi: 10.1111/j.1365-313X.2004.02088.x
Brand, A., Shirding, N., Shleizer, S. & Ori, N. Meristem maintenance and compound-leaf patterning utilize common genetic mechanisms in tomato. Planta 226, 941–951 (2007).
doi: 10.1007/s00425-007-0540-0
Torii, K. U. et al. The Arabidopsis ERECTA gene encodes a putative receptor protein kinase with extracellular leucine-rich repeats. Plant Cell 8, 735–746 (1996).
pubmed: 8624444
pmcid: 161133
Saito, T. et al. TOMATOMA: a novel tomato mutant database distributing micro-tom mutant collections. Plant Cell Physiol. 52, 283–296 (2011).
doi: 10.1093/pcp/pcr004
aan den Toorn, M., Albrecht, C. & de Vries, S. On the origin of SERKs: bioinformatics analysis of the somatic embryogenesis receptor kinases. Mol. Plant 8, 762–782 (2015).
doi: 10.1016/j.molp.2015.03.015
Shpak, E. D. Diverse roles of ERECTA family genes in plant development. J. Integr. Plant Biol. 55, 1238–1250 (2013).
doi: 10.1111/jipb.12108
Shpak, E. D., McAbee, J. M., Pillitteri, L. J. & Torii, K. U. Stomatal patterning and differentiation by synergistic interactions of receptor kinases. Science 309, 290–293 (2005).
doi: 10.1126/science.1109710
Masle, J., Gilmore, S. R. & Farquhar, G. D. The ERECTA gene regulates plant transpiration efficiency in Arabidopsis. Nature 436, 866–870 (2005).
doi: 10.1038/nature03835
Mandel, T. et al. The ERECTA receptor kinase regulates Arabidopsis shoot apical meristem size, phyllotaxy and floral meristem identity. Development 141, 830–841 (2014).
doi: 10.1242/dev.104687
Kimura, Y., Tasaka, M., Torii, K. U. & Uchida, N. ERECTA-family genes coordinate stem cell functions between the epidermal and internal layers of the shoot apical meristem. Development 145, dev156380 (2018).
doi: 10.1242/dev.156380
Zhang, Y. et al. Phylogenetic and CRISPR/Cas9 studies in deciphering the evolutionary trajectory and phenotypic impacts of rice ERECTA genes. Front. Plant Sci. 9, 473 (2018).
doi: 10.3389/fpls.2018.00473
Lemmon, Z. H. et al. Rapid improvement of domestication traits in an orphan crop by genome editing. Nat. Plants 4, 766–770 (2018).
doi: 10.1038/s41477-018-0259-x
Martínez, M. The correct application of Physalis pruinosa L. (Solanaceae). Taxon 42, 103–104 (1993).
doi: 10.2307/1223312
Rodríguez-Leal, D., Lemmon, Z. H., Man, J., Bartlett, M. E. & Lippman, Z. B. Engineering quantitative trait variation for crop improvement by genome editing. Cell 171, 470–480.e8 (2017).
doi: 10.1016/j.cell.2017.08.030
Elitzur, T. et al. Co-ordinated regulation of flowering time, plant architecture and growth by FASCICULATE: the pepper orthologue of SELF PRUNING. J. Exp. Bot. 60, 869–880 (2009).
doi: 10.1093/jxb/ern334
Varkonyi‐Gasic, E. et al. Mutagenesis of kiwifruit CENTRORADIALIS-like genes transforms a climbing woody perennial with long juvenility and axillary flowering into a compact plant with rapid terminal flowering. Plant Biotechnol. J. 17, 869–880 (2019).
doi: 10.1111/pbi.13021
Wen, C. et al. CsTFL1 inhibits determinate growth and terminal flower formation through interaction with CsNOT2a in cucumber. Development 146, dev180166 (2019).
doi: 10.1242/dev.180166
Eshed, Y. & Lippman, Z. B. Revolutions in agriculture chart a course for targeted breeding of old and new crops. Science 366, eaax0025 (2019).
Tomlinson, L. et al. Using CRISPR/Cas9 genome editing in tomato to create a gibberellin-responsive dominant dwarf DELLA allele. Plant Biotechnol. J. 17, 132–140 (2019).
doi: 10.1111/pbi.12952
Wheeler, R. M. Agriculture for space: people and places paving the way. Open Agric. 2, 14–32 (2017).
Wang, M., Dong, C. & Gao, W. Evaluation of the growth, photosynthetic characteristics, antioxidant capacity, biomass yield and quality of tomato using aeroponics, hydroponics and porous tube-vermiculite systems in bio-regenerative life support systems. Life Sci. Space Res. 22, 68–75 (2019).
doi: 10.1016/j.lssr.2019.07.008
Brooks, C., Nekrasov, V., Lippman, Z. B. & Van Eck, J. Efficient gene editing in tomato in the first generation using the clustered regularly interspaced short palindromic repeats/CRISPR-associated9 system. Plant Physiol. 166, 1292–1297 (2014).
doi: 10.1104/pp.114.247577
Van Eck, J., Keen, P. & Tjahjadi, M. in Transgenic Plants: Methods and Protocols (eds Kumar, S. et al.) 225–234 (Springer, 2019).
Swartwood, K. & Van Eck, J. Development of plant regeneration and Agrobacterium tumefaciens-mediated transformation methodology for Physalis pruinosa. Plant Cell Tissue Organ Cult. 137, 465–472 (2019).
doi: 10.1007/s11240-019-01582-x
Naito, Y., Hino, K., Bono, H. & Ui-Tei, K. CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites. Bioinformatics 31, 1120–1123 (2015).
doi: 10.1093/bioinformatics/btu743
Werner, S., Engler, C., Weber, E., Gruetzner, R. & Marillonnet, S. Fast track assembly of multigene constructs using Golden Gate cloning and the MoClo system. Bioeng. Bugs 3, 38–43 (2012).
pubmed: 22126803
Rodriguez-Leal, D. et al. Evolution of buffering in a genetic circuit controlling plant stem cell proliferation. Nat. Genet. 51, 786–792 (2019).
doi: 10.1038/s41588-019-0389-8
Soyk, S. et al. Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato. Nat. Plants 5, 471 (2019).
doi: 10.1038/s41477-019-0422-z
Park, S. J., Jiang, K., Schatz, M. C. & Lippman, Z. B. Rate of meristem maturation determines inflorescence architecture in tomato. Proc. Natl Acad. Sci. USA 109, 639–644 (2012).
doi: 10.1073/pnas.1114963109
Goodstein, D. M. et al. Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 40, D1178–D1186 (2012).
doi: 10.1093/nar/gkr944
Katoh, K. & Standley, D. M. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30, 772–780 (2013).
doi: 10.1093/molbev/mst010
Miller, M. A. et al. A RESTful API for access to phylogenetic tools via the CIPRES Science Gateway. Evol. Bioinform. Online 11, 43–48 (2015).
doi: 10.4137/EBO.S21501
Nguyen, L.-T., Schmidt, H. A., von Haeseler, A. & Minh, B. Q. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol. Biol. Evol. 32, 268–274 (2015).
doi: 10.1093/molbev/msu300
R Core Team. R: a language and environment for statistical computing. https://www.r-project.org (2018).