Clostridium cellulovorans metabolism of cellulose as studied by comparative proteomic approach.


Journal

Journal of proteomics
ISSN: 1876-7737
Titre abrégé: J Proteomics
Pays: Netherlands
ID NLM: 101475056

Informations de publication

Date de publication:
30 03 2020
Historique:
received: 02 10 2019
revised: 31 12 2019
accepted: 22 01 2020
pubmed: 27 1 2020
medline: 22 6 2021
entrez: 27 1 2020
Statut: ppublish

Résumé

Clostridium cellulovorans is among the most promising candidates for consolidated bioprocessing (CBP) of cellulosic biomass to liquid biofuels (ethanol, butanol). C. cellulovorans metabolizes all the main plant polysaccharides and mainly produces butyrate. Since most butyrate and butanol biosynthetic reactions from acetyl-CoA are common, introduction of single heterologous alcohol/aldehyde dehydrogenase can divert the branching-point intermediate (butyryl-CoA) towards butanol production in this strain. However, engineering C. cellulovorans metabolic pathways towards industrial utilization requires better understanding of its metabolism. The present study aimed at improving comprehension of cellulose metabolism in C. cellulovorans by comparing growth kinetics, substrate consumption/product accumulation and whole-cell soluble proteome (data available via ProteomeXchange, identifier PXD015487) with those of the same strain grown on a soluble carbohydrate, glucose, as the main carbon source. Growth substrate-dependent modulations of the central metabolism were detected, including regulation of several glycolytic enzymes, fermentation pathways (e.g. hydrogenase, pyruvate formate lyase, phosphate transacetylase) and nitrogen assimilation (e.g. glutamate dehydrogenase). Overexpression of hydrogenase and increased ethanol production by glucose-grown bacteria suggest a more reduced redox state. Higher energy expenditure seems to occur in cellulose-grown C. cellulovorans (likely related to overexpression and secretion of (hemi-)cellulases), which induces up-regulation of ATP synthetic pathways, e.g. acetate production and ATP synthase. SIGNIFICANCE: C. cellulovorans can metabolize all the main plant polysaccharides (cellulose, hemicelluloses and pectins) and, unlike other well established cellulolytic microorganisms, can produce butyrate. C. cellulovorans is therefore among the most attractive candidates for direct fermentation of lignocellulose to high-value chemicals and, especially, n-butanol, i.e. one of the most promising liquid biofuels for the future. Recent studies aimed at engineering n-butanol production in C. cellulovorans represent milestones towards production of biofuels through one-step fermentation of lignocellulose but also indicated that more detailed understanding of the C. cellulovorans central carbon metabolism is essential to refine metabolic engineering strategies towards improved n-butanol production in this strain. The present study helped identifying key genes associated with specific catabolic reactions and indicated modulations of central carbon metabolism (including redox and energy balance) associated with cellulose consumption. This information will be useful to determine key enzymes and possible metabolic bottlenecks to be addressed towards improved metabolic engineering of this strain.

Identifiants

pubmed: 31982546
pii: S1874-3919(20)30035-X
doi: 10.1016/j.jprot.2020.103667
pii:
doi:

Substances chimiques

Butanols 0
1-Butanol 8PJ61P6TS3
Cellulose 9004-34-6

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

103667

Informations de copyright

Copyright © 2020 Elsevier B.V. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare no conflict of interest.

Auteurs

Giulia Usai (G)

Structural and Functional Biochemistry, Laboratory of Proteomics and Metabolic Engineering of Prokaryotes, Department of Life Sciences and Systems Biology, University of Turinm, Via Accademia Albertina 13, 10123 Torino, Italy; Centre for Sustainable Future Technologies, Fondazione Istituto Italiano di Tecnologia, Environment Park, Parco Scientifico Tecnologico per l'Ambiente Via Livorno 60, 10144, Torino, Italy.

Simona Cirrincione (S)

Structural and Functional Biochemistry, Laboratory of Proteomics and Metabolic Engineering of Prokaryotes, Department of Life Sciences and Systems Biology, University of Turinm, Via Accademia Albertina 13, 10123 Torino, Italy.

Angela Re (A)

Centre for Sustainable Future Technologies, Fondazione Istituto Italiano di Tecnologia, Environment Park, Parco Scientifico Tecnologico per l'Ambiente Via Livorno 60, 10144, Torino, Italy.

Marcello Manfredi (M)

Center for Translational Research on Autoimmune and Allergic Diseases, Department of Translational Medicine, Università del Piemonte Orientale, Novara, Italy.

Andrea Pagnani (A)

DISAT, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Torino, Italy; Italian Institute for Genomic Medicine (IIGM), Via Nizza 52, 10126 Torino, Italy; Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Torino, Via Pietro Giuria 1, 10125 Torino, Italy.

Enrica Pessione (E)

Structural and Functional Biochemistry, Laboratory of Proteomics and Metabolic Engineering of Prokaryotes, Department of Life Sciences and Systems Biology, University of Turinm, Via Accademia Albertina 13, 10123 Torino, Italy.

Roberto Mazzoli (R)

Structural and Functional Biochemistry, Laboratory of Proteomics and Metabolic Engineering of Prokaryotes, Department of Life Sciences and Systems Biology, University of Turinm, Via Accademia Albertina 13, 10123 Torino, Italy. Electronic address: roberto.mazzoli@unito.it.

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Classifications MeSH