Optimizing Nervous System-Specific Gene Targeting with Cre Driver Lines: Prevalence of Germline Recombination and Influencing Factors.

Cre-lox conditional gene targeting conditional knockin conditional knockout conditional reporter germline recombination molecular genetics mosaic recombination parental sex bias site-specific recombinase

Journal

Neuron
ISSN: 1097-4199
Titre abrégé: Neuron
Pays: United States
ID NLM: 8809320

Informations de publication

Date de publication:
08 04 2020
Historique:
received: 25 07 2019
revised: 12 11 2019
accepted: 10 01 2020
pubmed: 7 2 2020
medline: 29 7 2020
entrez: 7 2 2020
Statut: ppublish

Résumé

The Cre-loxP system is invaluable for spatial and temporal control of gene knockout, knockin, and reporter expression in the mouse nervous system. However, we report varying probabilities of unexpected germline recombination in distinct Cre driver lines designed for nervous system-specific recombination. Selective maternal or paternal germline recombination is showcased with sample Cre lines. Collated data reveal germline recombination in over half of 64 commonly used Cre driver lines, in most cases with a parental sex bias related to Cre expression in sperm or oocytes. Slight differences among Cre driver lines utilizing common transcriptional control elements affect germline recombination rates. Specific target loci demonstrated differential recombination; thus, reporters are not reliable proxies for another locus of interest. Similar principles apply to other recombinase systems and other genetically targeted organisms. We hereby draw attention to the prevalence of germline recombination and provide guidelines to inform future research for the neuroscience and broader molecular genetics communities.

Identifiants

pubmed: 32027825
pii: S0896-6273(20)30008-8
doi: 10.1016/j.neuron.2020.01.008
pmc: PMC7377387
mid: NIHMS1607662
pii:
doi:

Substances chimiques

Cre recombinase EC 2.7.7.-
Integrases EC 2.7.7.-

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, N.I.H., Intramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

37-65.e5

Subventions

Organisme : NIDA NIH HHS
ID : R00 DA041445
Pays : United States
Organisme : NEI NIH HHS
ID : P30 EY005722
Pays : United States
Organisme : NIDA NIH HHS
ID : F32 DA038913
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY030611
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS057819
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS102237
Pays : United States
Organisme : NIDA NIH HHS
ID : R01 DA031833
Pays : United States
Organisme : NICHD NIH HHS
ID : K99 HD092545
Pays : United States
Organisme : NIMH NIH HHS
ID : R37 MH049428
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS103484
Pays : United States
Organisme : NIDA NIH HHS
ID : K99 DA041445
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY024694
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS083898
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH113349
Pays : United States
Organisme : NIDA NIH HHS
ID : R01 DA042744
Pays : United States
Organisme : NEI NIH HHS
ID : P30 EY012196
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH111647
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS050835
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS099099
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH081880
Pays : United States
Organisme : NICHD NIH HHS
ID : P50 HD103555
Pays : United States
Organisme : NINDS NIH HHS
ID : R37 NS029169
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS092578
Pays : United States
Organisme : Howard Hughes Medical Institute
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH049428
Pays : United States
Organisme : NINDS NIH HHS
ID : F31 NS092419
Pays : United States

Informations de copyright

Copyright © 2020 Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Interests The authors declare no competing interests.

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Auteurs

Lin Luo (L)

Djavad Mowafaghian Centre for Brain Health and Department of Psychiatry, University of British Columbia, 2211 Wesbrook Mall, Vancouver, BC V6T 2B5, Canada.

Mateusz C Ambrozkiewicz (MC)

Department of Molecular Neurobiology, Max Planck Institute of Experimental Medicine, Hermann-Rein-Strasse 3, 37075 Göttingen, Germany; Institute of Cell Biology and Neurobiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Charitéplatz 1, 10117 Berlin, Germany.

Fritz Benseler (F)

Department of Molecular Neurobiology, Max Planck Institute of Experimental Medicine, Hermann-Rein-Strasse 3, 37075 Göttingen, Germany.

Cui Chen (C)

State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Institutes of Brain Science, Fudan University, Shanghai 200032, China.

Emilie Dumontier (E)

Department of Neurology & Neurosurgery, Montreal Neurological Institute, McGill University, Montreal, QC H3A 2B4, Canada.

Susanne Falkner (S)

Biozentrum of the University of Basel, Basel, Switzerland.

Elisabetta Furlanis (E)

Biozentrum of the University of Basel, Basel, Switzerland.

Andrea M Gomez (AM)

Biozentrum of the University of Basel, Basel, Switzerland.

Naosuke Hoshina (N)

F.M. Kirby Neurobiology Center, Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.

Wei-Hsiang Huang (WH)

Department of Biology, Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA; Centre for Research in Neuroscience, Department of Neurology and Neurosurgery, The Research Institute of the McGill University Health Centre, Montreal, QC H3G 1A4, Canada.

Mary Anne Hutchison (MA)

Synapse and Neural Circuit Research Unit, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892, USA.

Yu Itoh-Maruoka (Y)

Division of Pathogenetic Signaling, Department of Biochemistry and Molecular Biology, Kobe University Graduate School of Medicine, 1-5-6 Minatojima-minamimachi, Chuo-ku, Kobe, Hyogo 650-0047, Japan.

Laura A Lavery (LA)

Department of Molecular and Human Genetics, Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, TX 77003, USA; Howard Hughes Medical Institute, Baylor College of Medicine, Houston, TX 77030, USA.

Wei Li (W)

State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Institutes of Brain Science, Fudan University, Shanghai 200032, China.

Tomohiko Maruo (T)

Division of Pathogenetic Signaling, Department of Biochemistry and Molecular Biology, Kobe University Graduate School of Medicine, 1-5-6 Minatojima-minamimachi, Chuo-ku, Kobe, Hyogo 650-0047, Japan; Department of Biochemistry, Tokushima University Graduate School of Medical Sciences, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan; Department of Biochemistry, Kitasato University School of Medicine, 1-15-1 Kitasato, Minami-ku, Sagamihara, Kanagawa 252-0374, Japan.

Junko Motohashi (J)

Department of Physiology, Keio University School of Medicine, 35 Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan.

Emily Ling-Lin Pai (EL)

Nina Ireland Laboratory of Developmental Neurobiology, Department of Psychiatry, UCSF Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA 94158, USA; Neuroscience Graduate Program, University of California, San Francisco, San Francisco, CA 94158, USA.

Kenneth A Pelkey (KA)

Section on Cellular and Synaptic Physiology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.

Ariane Pereira (A)

Department of Neurobiology and Department of Ophthalmology, Duke University School of Medicine, Durham, NC 27710, USA.

Thomas Philips (T)

Department of Neurology and Brain Science Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

Jennifer L Sinclair (JL)

Division of Developmental Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD 20892, USA.

Jeff A Stogsdill (JA)

Department of Cell Biology, Duke University Medical Center, Durham, NC 27710, USA; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02139, USA.

Lisa Traunmüller (L)

Biozentrum of the University of Basel, Basel, Switzerland.

Jiexin Wang (J)

Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA.

Joke Wortel (J)

Department of Functional Genomics and Department of Clinical Genetics, Center for Neurogenomics and Cognitive Research (CNCR), VU University Amsterdam and University Medical Center Amsterdam, de Boelelaan 1085, 1081 HV Amsterdam, the Netherlands.

Wenjia You (W)

Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA; Departments of Genetics, Harvard Medical School, Boston, MA 02115, USA; Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA.

Nashat Abumaria (N)

State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Institutes of Brain Science, Fudan University, Shanghai 200032, China; Department of Laboratory Animal Science, Shanghai Medical College, Fudan University, Shanghai 200032, China.

Kevin T Beier (KT)

Department of Physiology and Biophysics, Center for the Neurobiology of Learning and Memory, University of California, Irvine, Irvine, CA 92697, USA.

Nils Brose (N)

Department of Molecular Neurobiology, Max Planck Institute of Experimental Medicine, Hermann-Rein-Strasse 3, 37075 Göttingen, Germany.

Harold A Burgess (HA)

Division of Developmental Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD 20892, USA.

Constance L Cepko (CL)

Departments of Genetics, Harvard Medical School, Boston, MA 02115, USA; Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA.

Jean-François Cloutier (JF)

Department of Neurology & Neurosurgery, Montreal Neurological Institute, McGill University, Montreal, QC H3A 2B4, Canada.

Cagla Eroglu (C)

Department of Cell Biology, Department of Neurobiology, and Duke Institute for Brain Sciences, Regeneration Next Initiative, Duke University Medical Center, Durham, NC 27710, USA.

Sandra Goebbels (S)

Department of Neurogenetics, Max Planck Institute of Experimental Medicine, Hermann-Rein-Strasse 3, 37075 Göttingen, Germany.

Pascal S Kaeser (PS)

Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA.

Jeremy N Kay (JN)

Department of Neurobiology and Department of Ophthalmology, Duke University School of Medicine, Durham, NC 27710, USA.

Wei Lu (W)

Synapse and Neural Circuit Research Unit, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892, USA.

Liqun Luo (L)

Department of Biology, Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA.

Kenji Mandai (K)

Division of Pathogenetic Signaling, Department of Biochemistry and Molecular Biology, Kobe University Graduate School of Medicine, 1-5-6 Minatojima-minamimachi, Chuo-ku, Kobe, Hyogo 650-0047, Japan; Department of Biochemistry, Kitasato University School of Medicine, 1-15-1 Kitasato, Minami-ku, Sagamihara, Kanagawa 252-0374, Japan.

Chris J McBain (CJ)

Section on Cellular and Synaptic Physiology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.

Klaus-Armin Nave (KA)

Department of Neurogenetics, Max Planck Institute of Experimental Medicine, Hermann-Rein-Strasse 3, 37075 Göttingen, Germany.

Marco A M Prado (MAM)

Robarts Research Institute, Department of Anatomy and Cell Biology, and Department of Physiology and Pharmacology, Schulich School of Medicine & Dentistry, University of Western Ontario, London, ON N6A 5B7, Canada; Brain and Mind Institute, The University of Western Ontario, London, ON N6A 5B7, Canada.

Vania F Prado (VF)

Robarts Research Institute, Department of Anatomy and Cell Biology, and Department of Physiology and Pharmacology, Schulich School of Medicine & Dentistry, University of Western Ontario, London, ON N6A 5B7, Canada; Brain and Mind Institute, The University of Western Ontario, London, ON N6A 5B7, Canada.

Jeffrey Rothstein (J)

Department of Neurology and Brain Science Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

John L R Rubenstein (JLR)

Nina Ireland Laboratory of Developmental Neurobiology, Department of Psychiatry, UCSF Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA 94158, USA; Neuroscience Graduate Program, University of California, San Francisco, San Francisco, CA 94158, USA.

Gesine Saher (G)

Department of Neurogenetics, Max Planck Institute of Experimental Medicine, Hermann-Rein-Strasse 3, 37075 Göttingen, Germany.

Kenji Sakimura (K)

Department of Cellular Neurobiology, Brain Research Institute, Niigata University, Niigata 951-8585, Japan.

Joshua R Sanes (JR)

Center for Brain Science and Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.

Peter Scheiffele (P)

Biozentrum of the University of Basel, Basel, Switzerland.

Yoshimi Takai (Y)

Division of Pathogenetic Signaling, Department of Biochemistry and Molecular Biology, Kobe University Graduate School of Medicine, 1-5-6 Minatojima-minamimachi, Chuo-ku, Kobe, Hyogo 650-0047, Japan.

Hisashi Umemori (H)

F.M. Kirby Neurobiology Center, Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.

Matthijs Verhage (M)

Department of Functional Genomics and Department of Clinical Genetics, Center for Neurogenomics and Cognitive Research (CNCR), VU University Amsterdam and University Medical Center Amsterdam, de Boelelaan 1085, 1081 HV Amsterdam, the Netherlands.

Michisuke Yuzaki (M)

Department of Physiology, Keio University School of Medicine, 35 Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan.

Huda Yahya Zoghbi (HY)

Department of Molecular and Human Genetics, Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, TX 77003, USA; Howard Hughes Medical Institute, Baylor College of Medicine, Houston, TX 77030, USA.

Hiroshi Kawabe (H)

Department of Molecular Neurobiology, Max Planck Institute of Experimental Medicine, Hermann-Rein-Strasse 3, 37075 Göttingen, Germany; Division of Pathogenetic Signaling, Department of Biochemistry and Molecular Biology, Kobe University Graduate School of Medicine, 1-5-6 Minatojima-minamimachi, Chuo-ku, Kobe, Hyogo 650-0047, Japan; Department of Gerontology, Laboratory of Molecular Life Science, Institute of Biomedical Research and Innovation, Foundation for Biomedical Research and Innovation at Kobe, 2-2 Minatojima-minamimachi Chuo-ku, Kobe, Hyogo 650-0047, Japan. Electronic address: kawabe@em.mpg.de.

Ann Marie Craig (AM)

Djavad Mowafaghian Centre for Brain Health and Department of Psychiatry, University of British Columbia, 2211 Wesbrook Mall, Vancouver, BC V6T 2B5, Canada. Electronic address: acraig@mail.ubc.ca.

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