Draft whole-genome sequence of Brevibacterium casei strain isolated from a bloodstream infection.


Journal

Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]
ISSN: 1678-4405
Titre abrégé: Braz J Microbiol
Pays: Brazil
ID NLM: 101095924

Informations de publication

Date de publication:
Jun 2020
Historique:
received: 02 08 2019
accepted: 28 01 2020
pubmed: 19 2 2020
medline: 28 1 2021
entrez: 19 2 2020
Statut: ppublish

Résumé

Despite its low virulence potential and a commensal lifestyle as a member of the human skin microbiota, Brevibacterium casei has been increasingly reported as an opportunistic pathogen, especially in immunocompromised patients. Here, we present the draft genome sequence of the S51 strain isolated from a bloodstream infection. To the best of the authors' knowledge, this is the first report of the draft genome sequence of the B. casei strain isolated from the clinical infection. The strain was identified using phenotypic and molecular methods and subsequently sequenced using the next-generation sequencing. The draft whole genome was assembled de novo, automatically annotated by Rapid Annotations using Subsystems Technology (RAST) server and scrutinized to predict the presence of virulence, resistance, and stress response proteins. The genome size of the S51 strain was 3,743,532 bp and an average G+C content was 68.3%. The predicted genes included 48 genes involved in resistance to antibiotics (including vancomycin, fluoroquinolones, and beta-lactams) and toxic compounds (heavy metals), 16 genes involved in invasion and intracellular resistance (Mycobacterium virulence operons), and 94 genes involved in stress response (osmotic, oxidative stress, cold and heat shock). ResFinder has indicated the presence of a beta-lactamase, and a phenotypic analysis showed resistance to penicillin. This whole-genome NGS project for the S51strain has been deposited at EMBL/GenBank under the accession no. QNGF00000000.

Identifiants

pubmed: 32067212
doi: 10.1007/s42770-020-00236-x
pii: 10.1007/s42770-020-00236-x
pmc: PMC7203332
doi:

Substances chimiques

Anti-Bacterial Agents 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

685-689

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Auteurs

Alina Olender (A)

Chair and Department of Medical Microbiology, Medical University of Lublin, Lublin, Poland. alina.olender@umlub.pl.

Paweł Rutyna (P)

Biological Threats Identification and Countermeasure Centre, Military Institute of Hygiene and Epidemiology, Puławy, Poland.

Marcin Niemcewicz (M)

Biological Threats Identification and Countermeasure Centre, Military Institute of Hygiene and Epidemiology, Puławy, Poland.

Agnieszka Bogut (A)

Chair and Department of Medical Microbiology, Medical University of Lublin, Lublin, Poland.

Marzanna Ciesielka (M)

Chair and Department of Forensic Medicine, Medical University of Lublin, Lublin, Poland.

Grzegorz Teresiński (G)

Chair and Department of Forensic Medicine, Medical University of Lublin, Lublin, Poland.

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Classifications MeSH