The circadian clock shapes the
alternative splicing
circadian clock
circadian rhythm
polyadenylation
posttranscriptional regulation
Journal
The Journal of biological chemistry
ISSN: 1083-351X
Titre abrégé: J Biol Chem
Pays: United States
ID NLM: 2985121R
Informations de publication
Date de publication:
29 05 2020
29 05 2020
Historique:
received:
24
03
2020
revised:
10
04
2020
pubmed:
19
4
2020
medline:
29
12
2020
entrez:
19
4
2020
Statut:
ppublish
Résumé
The circadian clock in plants temporally coordinates biological processes throughout the day, synchronizing gene expression with diurnal environmental changes. Circadian oscillator proteins are known to regulate the expression of clock-controlled plant genes by controlling their transcription. Here, using a high-throughput RNA-Seq approach, we examined genome-wide circadian and diurnal control of the
Identifiants
pubmed: 32303634
pii: S0021-9258(17)49454-3
doi: 10.1074/jbc.RA120.013513
pmc: PMC7261790
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Pagination
7608-7619Subventions
Organisme : NIEHS NIH HHS
ID : R01 ES027255
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM118102
Pays : United States
Informations de copyright
© 2020 Yang et al.
Références
Plant J. 2019 Apr;98(2):260-276
pubmed: 30570805
Genome Res. 2012 Jun;22(6):1184-95
pubmed: 22391557
Plant Physiol. 2012 Aug;159(4):1845-56
pubmed: 22730426
Science. 2000 Dec 15;290(5499):2110-3
pubmed: 11118138
Nucleic Acids Res. 2012 Dec;40(22):11240-55
pubmed: 23042250
EMBO Rep. 2008 Oct;9(10):1013-8
pubmed: 18688255
Methods Mol Biol. 2013;1038:171-9
pubmed: 23872975
Genome Biol. 2004;5(12):R102
pubmed: 15575968
G3 (Bethesda). 2018 Nov 6;8(11):3539-3548
pubmed: 30181259
Bioinformatics. 2018 Jun 1;34(11):1841-1849
pubmed: 29360928
Cell Stress Chaperones. 2013 Jul;18(4):517-25
pubmed: 23334891
Nat Protoc. 2009;4(1):44-57
pubmed: 19131956
Trends Plant Sci. 2014 Apr;19(4):240-9
pubmed: 24373845
Science. 2010 Jan 1;327(5961):94-7
pubmed: 19965720
Nat Rev Mol Cell Biol. 2017 Jan;18(1):18-30
pubmed: 27677860
Biology (Basel). 2019 Mar 12;8(1):
pubmed: 30870980
BMC Plant Biol. 2014 May 19;14:136
pubmed: 24885185
Sci Rep. 2016 Jun 15;6:28060
pubmed: 27301740
Front Plant Sci. 2016 Jun 21;7:889
pubmed: 27446120
Nat Biotechnol. 2019 Aug;37(8):907-915
pubmed: 31375807
Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):9382-7
pubmed: 26170331
Genome Biol. 2008;9(8):R130
pubmed: 18710561
Plant Cell. 2012 Mar;24(3):961-81
pubmed: 22408072
PLoS Biol. 2007 Aug;5(8):e222
pubmed: 17683202
Plant Cell. 2006 Mar;18(3):639-50
pubmed: 16473970
Plant Cell. 2010 Sep;22(9):2926-9
pubmed: 20884799
Biol Direct. 2012 Jul 02;7:20
pubmed: 22747664
Genome Biol. 2012 Jun 21;13(6):R54
pubmed: 22721557
Nat Biotechnol. 2015 Mar;33(3):290-5
pubmed: 25690850
Plant J. 2017 Sep;91(5):829-839
pubmed: 28621907
Front Plant Sci. 2012 Jan 04;2:109
pubmed: 22629268
Bioinformatics. 2016 Nov 1;32(21):3351-3353
pubmed: 27378304
Cold Spring Harb Perspect Biol. 2016 Dec 1;8(12):
pubmed: 27663772
Nat Commun. 2018 Apr 17;9(1):1503
pubmed: 29666379
Genes (Basel). 2018 Dec 10;9(12):
pubmed: 30544736
BMC Genomics. 2020 Mar 12;21(1):224
pubmed: 32160860
Nucleic Acids Res. 2008 Dec;36(22):6977-87
pubmed: 18987006
Biochim Biophys Acta Gene Regul Mech. 2017 Jan;1860(1):84-94
pubmed: 27412912
Annu Rev Biochem. 2015;84:291-323
pubmed: 25784052
Elife. 2018 Jun 04;7:
pubmed: 29863472
Plant Physiol. 2015 Dec;169(4):2409-21
pubmed: 26491147
EBioMedicine. 2018 Jul;33:68-81
pubmed: 29936137
Cell. 2003 Jun 13;113(6):777-87
pubmed: 12809608
Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):21211-6
pubmed: 21097700
BMC Bioinformatics. 2006 Apr 05;7:191
pubmed: 16597342
Genome Res. 2010 Jan;20(1):45-58
pubmed: 19858364
BMC Genomics. 2008 May 14;9:220
pubmed: 18479511
Trends Plant Sci. 2019 Jun;24(6):496-506
pubmed: 30852095
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Nucleic Acids Res. 2018 Jan 4;46(D1):D802-D808
pubmed: 29092050
Front Plant Sci. 2016 Jul 27;7:1114
pubmed: 27512400
Nat Plants. 2016 Jan 11;2:15197
pubmed: 27249189
Bioinformatics. 2010 Mar 15;26(6):841-2
pubmed: 20110278
Proc Natl Acad Sci U S A. 2018 May 22;115(21):E4777-E4785
pubmed: 29735688
Nature. 2010 Nov 4;468(7320):112-6
pubmed: 20962777
Trends Plant Sci. 2018 Mar;23(3):248-259
pubmed: 29223924
Plant Cell. 2012 Oct;24(10):4066-82
pubmed: 23110899