Characterization of novel, pathogenic field strains of infectious bronchitis virus (IBV) in poultry in Trinidad and Tobago.
Animals
Chickens
Coronavirus Infections
/ veterinary
Ducks
Geese
Infectious bronchitis virus
/ classification
Phylogeny
Poultry Diseases
/ virology
Quail
RNA, Viral
Respiratory Tract Infections
/ veterinary
Sequence Analysis, RNA
/ veterinary
Trinidad and Tobago
Turkeys
Vaccination
/ veterinary
Viral Vaccines
/ immunology
Caribbean
Trinidad and Tobago
Turkey coronavirus
infectious bronchitis virus
recombinant
vaccination
Journal
Transboundary and emerging diseases
ISSN: 1865-1682
Titre abrégé: Transbound Emerg Dis
Pays: Germany
ID NLM: 101319538
Informations de publication
Date de publication:
Nov 2020
Nov 2020
Historique:
received:
28
01
2020
revised:
07
05
2020
accepted:
13
05
2020
pubmed:
22
5
2020
medline:
17
12
2020
entrez:
22
5
2020
Statut:
ppublish
Résumé
Avian coronaviruses, including infectious bronchitis virus (IBV) and turkey coronavirus (TCoV), are economically important viruses affecting poultry worldwide. IBV is responsible for causing severe losses to the commercial poultry sector globally. The objectives of this study were to identify the viruses that were causing outbreaks of severe respiratory disease in chickens in Trinidad and Tobago (T&T) and to characterize the strains. Swab samples were collected from birds showing severe respiratory signs in five farms on the island of Trinidad. Samples were tested for the presence of IBV, as well as avian influenza virus (AIV), Newcastle disease virus (NDV) and avian metapneumovirus (aMPV) by real-time reverse transcription polymerase chain reaction (qRT-PCR). All samples from the five farms tested negative for AIV, NDV and aMPV; however, samples from clinically affected birds in all five of the farms tested positive for IBV. Genetic data revealed the presence of TCoV in chickens on two of the farms. Interestingly, these two farms had never reared turkeys. Phylogenetic analysis showed that IBV S1 sequences formed two distinct clusters. Two sequences grouped with vaccine strains within the GI-1 lineage, whereas three sequences grouped together, but separately from other defined lineages, forming a likely new lineage of IBV. Pairwise comparison revealed that the three unique variant strains within the distinct lineage of IBV were significantly different in their S1 nucleotide coding regions from viruses in the closest lineage (16% difference) and locally used vaccine strains (>20% difference). Results also suggested that one of the samples was a recombinant virus, generated from a recombination event between a Trinidad virus of the GI-1 lineage and a Trinidad virus of the newly defined lineage. Many amino acid differences were also observed between the S1 coding regions of the circulating field and vaccine strains, indicating that the IBV vaccines may not be protective. Vaccine-challenge studies are however needed to prove this.
Substances chimiques
RNA, Viral
0
Viral Vaccines
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
2775-2788Subventions
Organisme : University of the West Indies
ID : 26607
Informations de copyright
© 2020 Blackwell Verlag GmbH.
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