A Vibrio cholerae Core Genome Multilocus Sequence Typing Scheme To Facilitate the Epidemiological Study of Cholera.

Alleles Bacterial Typing Techniques / methods Cholera / epidemiology Epidemiologic Studies Genome, Bacterial Genotype Humans Multilocus Sequence Typing / methods Phylogeny Polymorphism, Single Nucleotide Vibrio cholerae / classification Yemen / epidemiology
Vibrio cholerae cgMLST cholera core genome epidemiological surveillance gene-by-gene approach multilocus sequence typing whole-genome sequencing

Journal

Journal of bacteriology
ISSN: 1098-5530
Titre abrégé: J Bacteriol
Pays: United States
ID NLM: 2985120R

Informations de publication

Date de publication:
19 11 2020
Historique:
received: 18 02 2020
accepted: 07 06 2020
pubmed: 17 6 2020
medline: 22 4 2021
entrez: 17 6 2020
Statut: epublish

Résumé

Core genome multilocus sequence typing (cgMLST) has gained popularity in recent years in epidemiological research and subspecies-level classification. cgMLST retains the intuitive nature of traditional MLST but offers much greater resolution by utilizing significantly larger portions of the genome. Here, we introduce a cgMLST scheme for

Identifiants

DOI: 10.1128/JB.00086-20 PMID: 32540931 PMC: PMC7685551
pubmed: 32540931
pii: JB.00086-20
doi: 10.1128/JB.00086-20
pmc: PMC7685551
pii:
doi:

Types de publication

Evaluation Study Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

Copyright © 2020 American Society for Microbiology.

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Auteurs

Kevin Y H Liang (KYH)

Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.

Fabini D Orata (FD)

Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.
ORCID: 0000-0002-6814-5869

Mohammad Tarequl Islam (MT)

Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.

Tania Nasreen (T)

Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.

Munirul Alam (M)

Infectious Diseases Division, International Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.

Cheryl L Tarr (CL)

Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.

Yann F Boucher (YF)

Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada yboucher@ualberta.ca.
Saw Swee Hock School of Public Health, National University of Singapore, Singapore, Singapore.
Singapore Center for Environmental Life Sciences Engineering, National University of Singapore, Singapore, Singapore.
ORCID: 0000-0002-0036-6083

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Classifications MeSH

questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Composants de génome › Gènes › Allèles › A Vibrio cholerae Core Genome Multilocus...
questionsmedicales.fr › Techniques d'investigation › Techniques de laboratoire clinique › Techniques microbiologiques › Techniques bactériologiques › Techniques de typage bactérien › A Vibrio cholerae Core Genome Multilocus...
questionsmedicales.fr › Infection › Infections bactériennes et mycoses › Infections bactériennes › Infections bactériennes à Gram négatif › Infections à Vibrio › Choléra › A Vibrio cholerae Core Genome Multilocus...
questionsmedicales.fr › Environnement et santé publique › Santé publique › Méthodes épidémiologiques › Caractéristiques des études épidémiologiques › Études épidémiologiques › A Vibrio cholerae Core Genome Multilocus...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome bactérien › A Vibrio cholerae Core Genome Multilocus...
questionsmedicales.fr › Phénomènes génétiques › Génotype › A Vibrio cholerae Core Genome Multilocus...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Hominidae › Humains › A Vibrio cholerae Core Genome Multilocus...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Analyse de séquence d'ADN › Typage par séquençage multilocus › A Vibrio cholerae Core Genome Multilocus...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › A Vibrio cholerae Core Genome Multilocus...
questionsmedicales.fr › Phénomènes génétiques › Variation génétique › Polymorphisme génétique › Polymorphisme de nucléotide simple › A Vibrio cholerae Core Genome Multilocus...
questionsmedicales.fr › Bactéries › Proteobacteria › Gammaproteobacteria › Vibrionaceae › Vibrio › Vibrio cholerae › A Vibrio cholerae Core Genome Multilocus...
questionsmedicales.fr › Régions géographiques › Asie › Asie de l'Ouest › Moyen Orient › Yémen › A Vibrio cholerae Core Genome Multilocus...