Draft genome sequence of the oomycete Pythium destruens strain ATCC 64221 from a horse with pythiosis in Australia.


Journal

BMC research notes
ISSN: 1756-0500
Titre abrégé: BMC Res Notes
Pays: England
ID NLM: 101462768

Informations de publication

Date de publication:
09 Jul 2020
Historique:
received: 13 05 2020
accepted: 30 06 2020
entrez: 11 7 2020
pubmed: 11 7 2020
medline: 23 3 2021
Statut: epublish

Résumé

Genome sequences are a vital resource for accelerating the biological exploration of an organism of interest. Pythium destruens (a synonym of Pythium insidiosum) causes a difficult-to-treat infectious disease called pythiosis worldwide. Detection and management of pythiosis are challenging. Basic knowledge of the disease is lacking. Genomes of this organism isolated from different continents (i.e., Asia and the Americas) have been sequenced and publicly available. Here, we sequenced the genome of an Australian isolate of P. destruens. Genome data will facilitate the comparative analysis of this and related species at the molecular level. Genomic DNA of the P. destruens strain ATCC 64221, isolated from a horse with pythiosis in Australia, was used to prepare one paired-end library (with 180-bp insert) for next-generation sequencing, using the Illumina HiSeq 2500 short-read platform. Raw reads were cleaned and assembled by several bioinformatics tools. A total of 20,860,454 processed reads, accounted for 2,614,890,553 total bases, can be assembled into a 37.8-Mb genome, consisting 13,060 contigs (average length: 2896 bases; range: 300-142,967), N

Identifiants

pubmed: 32646477
doi: 10.1186/s13104-020-05168-1
pii: 10.1186/s13104-020-05168-1
pmc: PMC7346664
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

329

Subventions

Organisme : Mahidol University
ID : CF_61007
Organisme : Thailand Research Fund
ID : RSA6280092

Références

Data Brief. 2017 Oct 26;15:896-900
pubmed: 29159227
Genom Data. 2015 Nov 23;7:60-1
pubmed: 26981361
BMC Res Notes. 2020 Mar 6;13(1):135
pubmed: 32143691
Diagn Microbiol Infect Dis. 2013 May;76(1):42-5
pubmed: 23537786
Mycol Res. 2003 May;107(Pt 5):537-44
pubmed: 12884950
Infect Genet Evol. 2017 Oct;54:429-436
pubmed: 28826756
Bioinformatics. 2007 May 1;23(9):1061-7
pubmed: 17332020
Heliyon. 2020 Apr 12;6(4):e03737
pubmed: 32322727
Mycoses. 1989 Feb;32(2):73-7
pubmed: 2496306
Vet Microbiol. 2010 Nov 20;146(1-2):1-16
pubmed: 20800978
PeerJ. 2020 Feb 20;8:e8555
pubmed: 32117626
Clin Infect Dis. 2006 Sep 1;43(5):569-76
pubmed: 16886148
BMC Res Notes. 2018 Dec 11;11(1):880
pubmed: 30537981
J Med Assoc Thai. 2014 Mar;97(3):342-8
pubmed: 25123015
BMC Bioinformatics. 2011 Dec 22;12:491
pubmed: 22192575
J Med Vet Mycol. 1987 Jun;25(3):137-51
pubmed: 3612431
Med Mycol. 2016 Aug 1;54(6):641-7
pubmed: 27118800
Genome Res. 2008 May;18(5):821-9
pubmed: 18349386
Int J Infect Dis. 2018 Dec;77:61-67
pubmed: 30218817
Genome Announc. 2015 Jun 18;3(3):
pubmed: 26089407
Sci Rep. 2018 Mar 7;8(1):4135
pubmed: 29515152
Data Brief. 2017 Nov 07;16:47-50
pubmed: 29541657

Auteurs

Theerapong Krajaejun (T)

Department of Pathology, Faculty of Medicine, Ramathibodi Hospital, Mahidol University, Bangkok, Thailand. mr_en@hotmail.com.

Weerayuth Kittichotirat (W)

Systems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkhuntien, Bangkok, Thailand. weerayuth.kit@kmutt.ac.th.

Preecha Patumcharoenpol (P)

Systems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkhuntien, Bangkok, Thailand.

Thidarat Rujirawat (T)

Research Center, Faculty of Medicine, Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.

Tassanee Lohnoo (T)

Research Center, Faculty of Medicine, Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.

Wanta Yingyong (W)

Research Center, Faculty of Medicine, Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.

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Classifications MeSH