Draft genome sequence of the oomycete Pythium destruens strain ATCC 64221 from a horse with pythiosis in Australia.
Australia
Genome sequence
Pythiosis
Pythium destruens
Pythium insidiosum
Journal
BMC research notes
ISSN: 1756-0500
Titre abrégé: BMC Res Notes
Pays: England
ID NLM: 101462768
Informations de publication
Date de publication:
09 Jul 2020
09 Jul 2020
Historique:
received:
13
05
2020
accepted:
30
06
2020
entrez:
11
7
2020
pubmed:
11
7
2020
medline:
23
3
2021
Statut:
epublish
Résumé
Genome sequences are a vital resource for accelerating the biological exploration of an organism of interest. Pythium destruens (a synonym of Pythium insidiosum) causes a difficult-to-treat infectious disease called pythiosis worldwide. Detection and management of pythiosis are challenging. Basic knowledge of the disease is lacking. Genomes of this organism isolated from different continents (i.e., Asia and the Americas) have been sequenced and publicly available. Here, we sequenced the genome of an Australian isolate of P. destruens. Genome data will facilitate the comparative analysis of this and related species at the molecular level. Genomic DNA of the P. destruens strain ATCC 64221, isolated from a horse with pythiosis in Australia, was used to prepare one paired-end library (with 180-bp insert) for next-generation sequencing, using the Illumina HiSeq 2500 short-read platform. Raw reads were cleaned and assembled by several bioinformatics tools. A total of 20,860,454 processed reads, accounted for 2,614,890,553 total bases, can be assembled into a 37.8-Mb genome, consisting 13,060 contigs (average length: 2896 bases; range: 300-142,967), N
Identifiants
pubmed: 32646477
doi: 10.1186/s13104-020-05168-1
pii: 10.1186/s13104-020-05168-1
pmc: PMC7346664
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
329Subventions
Organisme : Mahidol University
ID : CF_61007
Organisme : Thailand Research Fund
ID : RSA6280092
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