Sedaghatian-type spondylometaphyseal dysplasia: Whole exome sequencing in neonatal dry blood spots enabled identification of a novel variant in GPX4.


Journal

European journal of medical genetics
ISSN: 1878-0849
Titre abrégé: Eur J Med Genet
Pays: Netherlands
ID NLM: 101247089

Informations de publication

Date de publication:
Nov 2020
Historique:
received: 02 09 2019
revised: 25 05 2020
accepted: 20 07 2020
pubmed: 23 8 2020
medline: 1 5 2021
entrez: 23 8 2020
Statut: ppublish

Résumé

Accumulation of lipid peroxides causes membrane damage and cell death. Glutathione peroxidase 4 (GPX4) acts as a hydroperoxidase which prevents accumulation of toxic oxidized lipids and blocks ferroptosis, an iron-dependent, non-apoptotic mode of cell death. GPX4 deficiency causes Sedaghatian-type spondylo-metaphyseal dysplasia (SSMD), a lethal autosomal recessive disorder, featuring skeletal dysplasia, cardiac arrhythmia and brain anomalies with only three pathogenic GPX4 variants reported in two SSMD patients. Our objective was to identify the underlying genetic cause of neonatal death of two siblings presenting with hypotonia, cardiorespiratory failure and SSMD. Whole exome sequencing (WES) was performed in DNA samples from two siblings and their parents. Since "critical samples" were not available from the patients, DNA was extracted from dry blood spots (DBS) retrieved from the Israeli newborn-screening center. Sanger sequencing and segregation analysis followed the WES. Homozygous novel GPX4 variant, c.153_160del; p.His52fs*1 causing premature truncation of GPX4 was detected in both siblings; their parents were heterozygotes. Segregation analysis confirmed autosomal recessive inheritance. This report underscores the importance of DBS WES in identifying the genes and mutations causing devastating rare diseases. Obtaining critical samples from a dying patient is crucial for enabling genetic diagnosis.

Identifiants

pubmed: 32827718
pii: S1769-7212(19)30597-X
doi: 10.1016/j.ejmg.2020.104020
pii:
doi:

Substances chimiques

Phospholipid Hydroperoxide Glutathione Peroxidase EC 1.11.1.12

Types de publication

Case Reports Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

104020

Informations de copyright

Copyright © 2020. Published by Elsevier Masson SAS.

Auteurs

Ayalla Fedida (A)

Institute of Human Genetics, Galilee Medical Center, Nahariya, Israel; The Azrieli Faculty of Medicine, Bar-Ilan, Safed, Israel.

Shani Ben Harouch (S)

Institute of Human Genetics, Galilee Medical Center, Nahariya, Israel; The Azrieli Faculty of Medicine, Bar-Ilan, Safed, Israel.

Limor Kalfon (L)

Institute of Human Genetics, Galilee Medical Center, Nahariya, Israel.

Zahi Abunassar (Z)

Department of Radiology, Saint Vincent De Paul Hospital, Nazareth, Israel.

Hussam Omari (H)

Neonatal Intensive Care Unit, Saint Vincent De Paul Hospital, Nazareth, Israel.

Hanna Mandel (H)

Institute of Human Genetics, Galilee Medical Center, Nahariya, Israel.

Tzipora C Falik-Zaccai (TC)

Institute of Human Genetics, Galilee Medical Center, Nahariya, Israel; The Azrieli Faculty of Medicine, Bar-Ilan, Safed, Israel. Electronic address: TziporaF@gmc.gov.il.

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Classifications MeSH