Genomic analysis of facultatively oligotrophic haloarchaea of the genera Halarchaeum, Halorubrum, and Halolamina, isolated from solar salt.
Facultatively oligotrophic haloarchaea
Genome sequence
Halarchaeum
Halolamina
Halorubrum
Solar salt
Journal
Archives of microbiology
ISSN: 1432-072X
Titre abrégé: Arch Microbiol
Pays: Germany
ID NLM: 0410427
Informations de publication
Date de publication:
Jan 2021
Jan 2021
Historique:
received:
27
01
2020
accepted:
02
09
2020
revised:
19
08
2020
pubmed:
13
9
2020
medline:
27
1
2021
entrez:
12
9
2020
Statut:
ppublish
Résumé
Extremely halophilic archaea (haloarchaea) belonging to the phylum Euryarchaeota have been found in high-salinity environments. In this study, Halarchaeum sp. CBA1220, Halorubrum sp. CBA1229, and Halolamina sp. CBA1230, which are facultatively oligotrophic haloarchaea, were isolated from solar salt by culture under oligotrophic culture conditions. The complete genomes of strains CBA1220, CBA1229, and CBA1230 were sequenced and were found to contain 3,175,875, 3,582,278, and 3,465,332 bp, with a G + C content of 68.25, 67.66, and 66.75 mol %, respectively. In total, 60, 36, and 33 carbohydrate-active enzyme genes were determined in the respective strains. The strains harbored various genes encoding stress-tolerance proteins, including universal stress proteins, cold-shock proteins, and rubrerythrin and rubrerythrin-related proteins. The genome data produced in this study will facilitate further research to improve our understanding of other halophilic strains and promote their industrial application.
Identifiants
pubmed: 32918097
doi: 10.1007/s00203-020-02027-2
pii: 10.1007/s00203-020-02027-2
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
261-268Subventions
Organisme : World Institute of Kimchi
ID : KE2001-2
Organisme : National Research Foundation of Korea
ID : 2018R1D1A1A09082921
Organisme : National Research Foundation of Korea
ID : 2018R1D1A1B07045349
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