The origin and evolution of a distinct mechanism of transcription initiation in yeasts.

Nucleotides Purines RNA Polymerase II / genetics Saccharomyces cerevisiae / genetics Transcription Initiation Site

Journal

Genome research
ISSN: 1549-5469
Titre abrégé: Genome Res
Pays: United States
ID NLM: 9518021

Informations de publication

Date de publication:
01 2021
Historique:
received: 04 04 2020
accepted: 17 11 2020
pubmed: 22 11 2020
medline: 16 12 2021
entrez: 21 11 2020
Statut: ppublish

Résumé

The molecular process of transcription by RNA Polymerase II is highly conserved among eukaryotes ("classic model"). A distinct way of locating transcription start sites (TSSs) has been identified in a budding yeast

Identifiants

DOI: 10.1101/gr.264325.120 PMID: 33219055 PMC: PMC7849388
pubmed: 33219055
pii: gr.264325.120
doi: 10.1101/gr.264325.120
pmc: PMC7849388
doi:

Substances chimiques

Nucleotides 0
Purines 0
RNA Polymerase II EC 2.7.7.-

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

51-63

Informations de copyright

© 2021 Lu and Lin; Published by Cold Spring Harbor Laboratory Press.

Références

Cell. 1975 Oct;6(2):185-95
pubmed: 1182800
Mol Cell Biol. 2012 Jan;32(1):12-25
pubmed: 22025674
Nucleic Acids Res. 2005 May 19;33(9):2838-51
pubmed: 15905473
Elife. 2014 Apr 22;3:e02450
pubmed: 24755292
BMC Genomics. 2010 Mar 12;11:166
pubmed: 20222994
RNA Biol. 2015;12(5):525-37
pubmed: 25747261
Mol Cell Biol. 2010 Jul;30(14):3471-9
pubmed: 20457814
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Science. 1993 Aug 6;261(5122):759-62
pubmed: 8342041
Nature. 2012 Jun 28;486(7404):496-501
pubmed: 22722846
J Mol Biol. 2016 Jun 19;428(12):2592-2606
pubmed: 27107643
Nucleic Acids Res. 2019 Jan 8;47(D1):D807-D811
pubmed: 30395283
J Biol Chem. 2016 Jul 15;291(29):15307-19
pubmed: 27226635
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W273-9
pubmed: 15215394
Genome Res. 2013 Jun;23(6):977-87
pubmed: 23580730
Database (Oxford). 2019 Jan 1;2019:
pubmed: 31032841
Genetics. 2011 Nov;189(3):705-36
pubmed: 22084422
Genome Biol Evol. 2014 Sep;6(9):2543-56
pubmed: 25364803
Mol Biol Evol. 2012 Jan;29(1):81-9
pubmed: 21965341
Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19333-8
pubmed: 23129628
Science. 2005 Sep 2;309(5740):1559-63
pubmed: 16141072
Cell. 2004 Mar 5;116(5):699-709
pubmed: 15006352
J Biol Chem. 2006 May 19;281(20):14119-28
pubmed: 16571719
Nature. 1975 May 1;255(5503):33-7
pubmed: 165427
PLoS One. 2011;6(11):e27595
pubmed: 22110682
C R Biol. 2011 Aug-Sep;334(8-9):679-86
pubmed: 21819950
Nature. 2013 Jan 17;493(7432):437-40
pubmed: 23151482
FEMS Yeast Res. 2019 Mar 1;19(2):
pubmed: 30590648
Genes Dev. 1999 Dec 15;13(24):3217-30
pubmed: 10617571
Genome Res. 2018 Feb;28(2):214-222
pubmed: 29254944
Nat Genet. 2006 Jun;38(6):626-35
pubmed: 16645617
Nature. 2012 Sep 6;489(7414):57-74
pubmed: 22955616
Mol Biol Evol. 2017 Jul 1;34(7):1812-1819
pubmed: 28387841
Cell. 2018 Feb 22;172(5):910-923.e16
pubmed: 29474919
Genome Res. 2018 May;28(5):676-688
pubmed: 29618487
Nat Rev Mol Cell Biol. 2018 Mar;19(3):158-174
pubmed: 29165424
Methods Mol Biol. 2014;1164:67-85
pubmed: 24927836
Genome Res. 2019 Jul;29(7):1198-1210
pubmed: 31076411
Annu Rev Biochem. 2003;72:449-79
pubmed: 12651739
Nucleic Acids Res. 2019 Feb 28;47(4):1671-1691
pubmed: 30566651
Nat Methods. 2018 Jul;15(7):505-511
pubmed: 29867192
Mol Cell. 2010 May 28;38(4):576-89
pubmed: 20513432
Genome Res. 2013 Jan;23(1):169-80
pubmed: 22936248
Genome Biol. 2020 Jun 2;21(1):132
pubmed: 32487207
Nat Methods. 2006 Mar;3(3):211-22
pubmed: 16489339
Mol Cell. 2017 Aug 17;67(4):594-607.e4
pubmed: 28735899
Nature. 2012 Jan 18;483(7389):295-301
pubmed: 22258509
Nature. 2000 Aug 3;406(6795):541-4
pubmed: 10952318
Science. 2011 May 20;332(6032):930-6
pubmed: 21511999
Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20158-63
pubmed: 24277842
Nat Methods. 2015 Apr;12(4):357-60
pubmed: 25751142
Genome Res. 2020 Jun;30(6):910-923
pubmed: 32660958
Trends Genet. 2008 Apr;24(4):167-77
pubmed: 18329129
Genome Res. 2011 Feb;21(2):182-92
pubmed: 21177961
Science. 1994 Feb 11;263(5148):805-7
pubmed: 8303296
Trends Biochem Sci. 1996 Sep;21(9):327-35
pubmed: 8870495
Nat Genet. 2017 Apr;49(4):550-558
pubmed: 28191888
Nature. 2009 Nov 19;462(7271):323-30
pubmed: 19820686
J Mol Biol. 2002 Jun 21;319(5):1005-13
pubmed: 12079343

Auteurs

Zhaolian Lu (Z)

Department of Biology, Saint Louis University, St. Louis, Missouri 63104, USA.

Zhenguo Lin (Z)

Department of Biology, Saint Louis University, St. Louis, Missouri 63104, USA.
ORCID: 0000-0002-8400-9138

Articles similaires

Saccharomyces cerevisiae whole cell biotransformation for the production of aldehyde flavors and fragrances.

Nazreen V M Abdul Muthaliff, Yao Zong Ng, Wei Mei Guo et al.
1.00
Saccharomyces cerevisiae Aldehydes Biotransformation Flavoring Agents Lipoxygenase

The dual life of disordered lysine-rich domains of snoRNPs in rRNA modification and nucleolar compaction.

Carine Dominique, Nana Kadidia Maiga, Alfonso Méndez-Godoy et al.
1.00
Saccharomyces cerevisiae Lysine Cell Nucleolus RNA, Ribosomal Saccharomyces cerevisiae Proteins

Minimisation of metabolic networks defines a new functional class of genes.

Giorgio Jansen, Tanda Qi, Vito Latora et al.
1.00
Metabolic Networks and Pathways Saccharomyces cerevisiae Computational Biology Synthetic Biology Computer Simulation

Mutational analysis of Phanerochaete chrysosporium´s purine transporter.

Mariana Barraco-Vega, Manuel Sanguinetti, Gabriela da Rosa et al.
1.00
Phanerochaete Fungal Proteins Purines Aspergillus nidulans DNA Mutational Analysis

Classifications MeSH

questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Nucléotides › The origin and evolution of a distinct...
questionsmedicales.fr › Composés hétérocycliques › Composés hétérocycliques à cycles fusionnés › Composés hétérobicycliques › Purines › The origin and evolution of a distinct...
questionsmedicales.fr › Enzymes et coenzymes › Enzymes › Transferases › Phosphotransferases › Nucleotidyltransferases › RNA nucleotidyltransferases › DNA-directed RNA polymerases › RNA polymerase II › The origin and evolution of a distinct...
questionsmedicales.fr › Eucaryotes › Champignons › Levures › Saccharomyces › Saccharomyces cerevisiae › The origin and evolution of a distinct...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Composants de génome › Gènes › Composants de gène › Éléments de régulation transcriptionnelle › Site d'initiation de la transcription › The origin and evolution of a distinct...