The barley pan-genome reveals the hidden legacy of mutation breeding.

Chromosome Inversion / genetics Chromosome Mapping Chromosomes, Plant / genetics Genetic Loci / genetics Genome, Plant / genetics Genotype Hordeum / classification Internationality Mutation Plant Breeding Polymorphism, Genetic / genetics Reference Standards Seed Bank Sequence Inversion Whole Genome Sequencing

Journal

Nature
ISSN: 1476-4687
Titre abrégé: Nature
Pays: England
ID NLM: 0410462

Informations de publication

Date de publication:
12 2020
Historique:
received: 03 04 2020
accepted: 09 09 2020
pubmed: 27 11 2020
medline: 3 2 2021
entrez: 26 11 2020
Statut: ppublish

Résumé

Genetic diversity is key to crop improvement. Owing to pervasive genomic structural variation, a single reference genome assembly cannot capture the full complement of sequence diversity of a crop species (known as the 'pan-genome'

Identifiants

DOI: 10.1038/s41586-020-2947-8 PMID: 33239781 PMC: PMC7759462
pubmed: 33239781
doi: 10.1038/s41586-020-2947-8
pii: 10.1038/s41586-020-2947-8
pmc: PMC7759462
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

284-289

Subventions

Organisme : European Research Council
Pays : International

Commentaires et corrections

Type : CommentIn

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Auteurs

Murukarthick Jayakodi (M)

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.
ORCID: 0000-0003-2951-0541

Sudharsan Padmarasu (S)

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.
ORCID: 0000-0003-3125-3695

Georg Haberer (G)

Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany.

Venkata Suresh Bonthala (VS)

Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany.
ORCID: 0000-0001-6550-1648

Heidrun Gundlach (H)

Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany.
ORCID: 0000-0002-6757-0943

Cécile Monat (C)

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.
ORCID: 0000-0002-0574-3976

Thomas Lux (T)

Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany.
ORCID: 0000-0002-5543-1911

Nadia Kamal (N)

Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany.

Daniel Lang (D)

Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany.
ORCID: 0000-0002-2166-0716

Axel Himmelbach (A)

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.

Jennifer Ens (J)

Department of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
ORCID: 0000-0003-2663-1006

Xiao-Qi Zhang (XQ)

Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia.

Tefera T Angessa (TT)

Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia.
ORCID: 0000-0002-2400-1732

Gaofeng Zhou (G)

Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia.
Agriculture and Food, Department of Primary Industries and Regional Development, South Perth, Western Australia, Australia.

Cong Tan (C)

Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia.

Camilla Hill (C)

Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia.

Penghao Wang (P)

Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia.

Miriam Schreiber (M)

The James Hutton Institute, Dundee, UK.

Lori B Boston (LB)

HudsonAlpha, Institute for Biotechnology, Huntsville, AL, USA.

Christopher Plott (C)

HudsonAlpha, Institute for Biotechnology, Huntsville, AL, USA.

Jerry Jenkins (J)

HudsonAlpha, Institute for Biotechnology, Huntsville, AL, USA.
ORCID: 0000-0002-7943-3997

Yu Guo (Y)

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.

Anne Fiebig (A)

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.

Hikmet Budak (H)

Montana BioAg Inc, Missoula, MT, USA.
ORCID: 0000-0002-2556-2478

Dongdong Xu (D)

Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (ICS-CAAS), Beijing, China.

Jing Zhang (J)

Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (ICS-CAAS), Beijing, China.

Chunchao Wang (C)

Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (ICS-CAAS), Beijing, China.

Jane Grimwood (J)

HudsonAlpha, Institute for Biotechnology, Huntsville, AL, USA.

Jeremy Schmutz (J)

HudsonAlpha, Institute for Biotechnology, Huntsville, AL, USA.
ORCID: 0000-0001-8062-9172

Ganggang Guo (G)

Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (ICS-CAAS), Beijing, China.
ORCID: 0000-0001-9970-5382

Guoping Zhang (G)

College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.

Keiichi Mochida (K)

Bioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan.
Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan.

Takashi Hirayama (T)

Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan.
ORCID: 0000-0002-3868-2380

Kazuhiro Sato (K)

Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan.
ORCID: 0000-0001-8818-5203

Kenneth J Chalmers (KJ)

School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, South Australia, Australia.

Peter Langridge (P)

School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, South Australia, Australia.
ORCID: 0000-0001-9494-400X

Robbie Waugh (R)

The James Hutton Institute, Dundee, UK.
School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, South Australia, Australia.
School of Life Sciences, University of Dundee, Dundee, UK.
ORCID: 0000-0003-1045-3065

Curtis J Pozniak (CJ)

Department of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
ORCID: 0000-0002-7536-3856

Uwe Scholz (U)

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.
ORCID: 0000-0001-6113-3518

Klaus F X Mayer (KFX)

Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany.
School of Life Sciences Weihenstephan, Technical University of Munich, Freising, Germany.
ORCID: 0000-0001-6484-1077

Manuel Spannagl (M)

Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany.
ORCID: 0000-0003-0701-7035

Chengdao Li (C)

Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia. C.Li@murdoch.edu.au.
Agriculture and Food, Department of Primary Industries and Regional Development, South Perth, Western Australia, Australia. C.Li@murdoch.edu.au.
Hubei Collaborative Innovation Centre for Grain Industry, Yangtze University, Jingzhou, China. C.Li@murdoch.edu.au.
ORCID: 0000-0002-9653-2700

Martin Mascher (M)

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany. mascher@ipk-gatersleben.de.
German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany. mascher@ipk-gatersleben.de.
ORCID: 0000-0001-6373-6013

Nils Stein (N)

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany. stein@ipk-gatersleben.de.
Center for Integrated Breeding Research (CiBreed), Georg-August-University Göttingen, Göttingen, Germany. stein@ipk-gatersleben.de.
ORCID: 0000-0003-3011-8731

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Classifications MeSH

questionsmedicales.fr › Phénomènes génétiques › Mutagenèse › Inversion de séquence › Inversion chromosomique › The barley pan-genome reveals the hidden...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Cartographie chromosomique › The barley pan-genome reveals the hidden...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Chromosomes › Chromosomes de plante › The barley pan-genome reveals the hidden...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Composants de génome › Locus génétiques › The barley pan-genome reveals the hidden...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome végétal › The barley pan-genome reveals the hidden...
questionsmedicales.fr › Phénomènes génétiques › Génotype › The barley pan-genome reveals the hidden...
questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Poaceae › Hordeum › The barley pan-genome reveals the hidden...
questionsmedicales.fr › Sciences sociales › Internationalité › The barley pan-genome reveals the hidden...
questionsmedicales.fr › Phénomènes génétiques › Variation génétique › Mutation › The barley pan-genome reveals the hidden...
questionsmedicales.fr › Technologie, industrie et agriculture › Agriculture › Production végétale › Amélioration des plantes › The barley pan-genome reveals the hidden...
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