Genomic epidemiology of
Adult
Drug Resistance, Multiple, Bacterial
Escherichia coli
/ classification
Escherichia coli Infections
/ epidemiology
Feasibility Studies
Female
Humans
Longitudinal Studies
Malawi
/ epidemiology
Male
Middle Aged
Multilocus Sequence Typing
Phylogeny
Plasmids
/ genetics
Prevalence
Sequence Analysis, DNA
Tertiary Care Centers
Whole Genome Sequencing
/ methods
Young Adult
Africa
Escherichia coli
Malawi
antimicrobial resistance
molecular epidemiology
whole genome sequencing
Journal
Microbial genomics
ISSN: 2057-5858
Titre abrégé: Microb Genom
Pays: England
ID NLM: 101671820
Informations de publication
Date de publication:
01 2021
01 2021
Historique:
pubmed:
10
12
2020
medline:
28
8
2021
entrez:
9
12
2020
Statut:
ppublish
Résumé
Antimicrobial resistance (AMR) is a global threat, including in sub-Saharan Africa. However, little is known about the genetics of resistant bacteria in the region. In Malawi, there is growing concern about increasing rates of antimicrobial resistance to most empirically used antimicrobials. The highly drug resistant
Identifiants
pubmed: 33295867
doi: 10.1099/mgen.0.000490
pmc: PMC8115906
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : NIDDK NIH HHS
ID : K01 DK119582
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001863
Pays : United States
Références
J Antimicrob Chemother. 2017 Jun 1;72(6):1602-1609
pubmed: 28333330
Clin Infect Dis. 2019 Oct 30;69(Suppl 6):S466-S473
pubmed: 31665773
J Clin Microbiol. 2012 Feb;50(2):449-56
pubmed: 22075599
Genome Med. 2014 Nov 20;6(11):90
pubmed: 25422674
Bioinformatics. 2015 Nov 15;31(22):3691-3
pubmed: 26198102
Appl Environ Microbiol. 2008 Apr;74(8):2360-9
pubmed: 18281426
Infect Immun. 1982 Feb;35(2):654-9
pubmed: 7035371
Pathog Glob Health. 2015;109(7):309-18
pubmed: 26343252
Int J Pediatr. 2011;2011:825123
pubmed: 21785610
Bioinformatics. 2018 Sep 15;34(18):3094-3100
pubmed: 29750242
Sci Rep. 2019 Nov 22;9(1):17394
pubmed: 31758048
Nat Microbiol. 2018 Sep;3(9):1063-1073
pubmed: 30127495
PLoS One. 2012;7(9):e44063
pubmed: 22970162
F1000Res. 2019 Dec 23;8:2138
pubmed: 31984131
East Afr Med J. 2007 Mar;84(3):136-40
pubmed: 17600983
Lancet Infect Dis. 2020 Mar;20(3):285-286
pubmed: 32112760
J Antimicrob Chemother. 2020 Jan 1;75(1):65-71
pubmed: 31538190
Genome Res. 2017 May;27(5):737-746
pubmed: 28100585
Antimicrob Agents Chemother. 2010 Mar;54(3):1327-30
pubmed: 20047913
Nature. 1979 Jun 28;279(5716):778-81
pubmed: 377103
Sci Rep. 2019 Nov 11;9(1):16457
pubmed: 31712587
Antimicrob Agents Chemother. 2014 Sep;58(9):4997-5004
pubmed: 24867985
Int J Antimicrob Agents. 2010 Jul;36(1):19-23
pubmed: 20359869
J Infect Dis. 2016 Jan 1;213(1):6-13
pubmed: 26333944
Antimicrob Agents Chemother. 2017 Jul 25;61(8):
pubmed: 28584139
Nat Biotechnol. 2019 May;37(5):540-546
pubmed: 30936562
BMC Infect Dis. 2007 Jan 26;7:2
pubmed: 17257423
Bioinformatics. 2019 Nov 1;35(21):4453-4455
pubmed: 31070718
Infect Immun. 1995 Dec;63(12):4721-8
pubmed: 7591128
G3 (Bethesda). 2021 Mar 26;:
pubmed: 33768248
Afr J Med Med Sci. 2006 Jun;35(2):137-41
pubmed: 17209308
Front Microbiol. 2019 Jul 04;10:1446
pubmed: 31333599
Nat Commun. 2019 Apr 23;10(1):1869
pubmed: 31015479
J Appl Microbiol. 2013 Jan;114(1):11-24
pubmed: 22924898
J Comput Biol. 2012 May;19(5):455-77
pubmed: 22506599
BMC Bioinformatics. 2004 Aug 19;5:113
pubmed: 15318951
Front Microbiol. 2012 Apr 02;3:110
pubmed: 22485109
Front Microbiol. 2017 Dec 12;8:2476
pubmed: 29312186
J Clin Microbiol. 2006 Oct;44(10):3703-11
pubmed: 17021100
PLoS One. 2019 Jul 30;14(7):e0220494
pubmed: 31361781
BMC Infect Dis. 2019 Feb 11;19(1):137
pubmed: 30744567
Infect Immun. 2000 Mar;68(3):1400-7
pubmed: 10678953
Antimicrob Agents Chemother. 2017 Jul 25;61(8):
pubmed: 28584160
Infect Immun. 2002 Aug;70(8):4539-46
pubmed: 12117966
Infect Genet Evol. 2012 Mar;12(2):214-26
pubmed: 22266241
Int J Med Microbiol. 2013 Aug;303(6-7):305-17
pubmed: 23490927
Microb Genom. 2020 Apr;6(4):
pubmed: 32213258
Clin Infect Dis. 2019 Jun 18;69(1):61-68
pubmed: 30277505
Antimicrob Resist Infect Control. 2018 Jun 8;7:72
pubmed: 29977533
Sci Rep. 2018 Jul 19;8(1):10931
pubmed: 30026559