Backbone and ILVM methyl resonance assignments of human thymidylate synthase in apo and substrate bound forms.

Enzyme dynamics NMR Nucleotide synthesis Thymidylate synthase

Journal

Biomolecular NMR assignments
ISSN: 1874-270X
Titre abrégé: Biomol NMR Assign
Pays: Netherlands
ID NLM: 101472371

Informations de publication

Date de publication:
04 2021
Historique:
received: 11 11 2020
accepted: 08 01 2021
pubmed: 25 1 2021
medline: 17 12 2021
entrez: 24 1 2021
Statut: ppublish

Résumé

Human thymidylate synthase (hTS) is a 72 kDa homodimeric enzyme responsible for the conversion of deoxyuridine monophosphate (dUMP) to deoxythymidine monophosphate (dTMP), making it the sole source of de novo dTMP in human cells. As a result, hTS is an attractive anti-cancer therapeutic target. Additionally, hTS is known to possess a number of interesting biophysical features, including adoption of active and inactive conformations, positively cooperative substrate binding, half-the-sites activity, and interacting with its own mRNA. The physical mechanisms underlying these properties, and how they may be leveraged to guide therapeutic development, are yet to be fully explored. Here, as a preface to detailed NMR characterization, we present backbone amide and ILVM methyl resonance assignments for hTS in apo and dUMP bound forms. In addition, we present backbone amide resonance assignments for hTS bound to a substrate analog and the native cofactor.

Identifiants

pubmed: 33486616
doi: 10.1007/s12104-021-10006-x
pii: 10.1007/s12104-021-10006-x
pmc: PMC7979492
mid: NIHMS1666529
doi:

Substances chimiques

Thymidylate Synthase EC 2.1.1.45

Types de publication

Journal Article Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

197-202

Subventions

Organisme : NIGMS NIH HHS
ID : T32 GM008570
Pays : United States
Organisme : NCI NIH HHS
ID : P30CA016086
Pays : United States
Organisme : NCI NIH HHS
ID : P30 CA016086
Pays : United States
Organisme : NIGMS NIH HHS
ID : 5 T32 GM 8570-22
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM083059
Pays : United States

Références

Bonin JP et al (2019) Positive cooperativity in substrate binding by human thymidylate. Synthase Biophys J 117:1074–1084. https://doi.org/10.1016/j.bpj.2019.08.015
doi: 10.1016/j.bpj.2019.08.015
Chen D, Jansson A, Sim D, Larsson A, Nordlund P (2017) Structural analyses of human thymidylate synthase reveal a site that may control conformational switching between active and inactive states. J Biol Chem 292:13449–13458. https://doi.org/10.1074/jbc.M117.787267
doi: 10.1074/jbc.M117.787267
Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6:277–293. https://doi.org/10.1007/BF00197809
doi: 10.1007/BF00197809
Heinig M, Frishman D (2004) STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins. Nucleic Acids Res 32:W500–W502. https://doi.org/10.1093/nar/gkh429
doi: 10.1093/nar/gkh429
Johnson BA (2004) Using NMRView to visualize and analyze the NMR spectra of macromolecules. Methods Mol Biol 278:313–352. https://doi.org/10.1385/1-59259-809-9:313
doi: 10.1385/1-59259-809-9:313
Monneau YR et al (2017) Automatic methyl assignment in large proteins by the MAGIC algorithm. J Biomol NMR 69:215–227. https://doi.org/10.1007/s10858-017-0149-y
doi: 10.1007/s10858-017-0149-y
Rossi P, Xia Y, Khanra N, Veglia G, Kalodimos CG (2016) (15)N and (13)C- SOFAST-HMQC editing enhances 3D-NOESY sensitivity in highly deuterated, selectively [(1)H,(13)C]-labeled proteins. J Biomol NMR 66:259–271. https://doi.org/10.1007/s10858-016-0074-5
doi: 10.1007/s10858-016-0074-5
Salzmann M, Pervushin K, Wider G, Senn H, Wuthrich K (1998) TROSY in triple-resonance experiments: new perspectives for sequential NMR assignment of large proteins. P Natl Acad Sci USA 95:13585–13590. https://doi.org/10.1073/pnas.95.23.13585
doi: 10.1073/pnas.95.23.13585
Salzmann M, Wider G, Pervushin K, Senn H, Wuthrich K (1999) TROSY-type triple-resonance experiments for sequential NMR assignments of large proteins. J Am Chem Soc 121:844–848. https://doi.org/10.1021/ja9834226
doi: 10.1021/ja9834226
Sapienza PJ, Lee AL (2014) Backbone and ILV methyl resonance assignments of E. coli thymidylate synthase bound to cofactor and a nucleotide analogue. Biomol NMR Assign 8:195–199. https://doi.org/10.1007/s12104-013-9482-6
doi: 10.1007/s12104-013-9482-6
Sapienza PJ, Falk BT, Lee AL (2015) Bacterial thymidylate synthase binds two molecules of substrate and cofactor without cooperativity. J Am Chem Soc 137:14260–14263. https://doi.org/10.1021/jacs.5b10128
doi: 10.1021/jacs.5b10128
Shen Y, Delaglio F, Cornilescu G, Bax A (2009) TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. J Biomol NMR 44:213–223. https://doi.org/10.1007/s10858-009-9333-z
doi: 10.1007/s10858-009-9333-z
Spencer HT, Villafranca JE, Appleman JR (1997) Kinetic scheme for thymidylate synthase from Escherichia coli: determination from measurements of ligand binding, primary and secondary isotope effects, and pre-steady-state. catal Biochem 36:4212–4222. https://doi.org/10.1021/bi961794q
doi: 10.1021/bi961794q
Stroud RM, Finer-Moore JS (2003) Conformational dynamics along an enzymatic reaction pathway: thymidylate synthase. "the movie” Biochemistry 42:239–247. https://doi.org/10.1021/bi020598i
doi: 10.1021/bi020598i
Tai N, Schmitz JC, Liu J, Lin X, Bailly M, Chen TM, Chu E (2004) Translational autoregulation of thymidylate synthase and dihydrofolate reductase. Front Biosci 9:2521–2526. https://doi.org/10.2741/1413
doi: 10.2741/1413
Tugarinov V, Kay LE (2003) Ile, Leu, and Val methyl assignments of the 723-residue malate synthase G using a new labeling strategy and novel NMR methods. J Am Chem Soc 125:13868–13878. https://doi.org/10.1021/ja030345s
doi: 10.1021/ja030345s
Wider G, Dreier L (2006) Measuring protein concentrations by NMR spectroscopy. J Am Chem Soc 128:2571–2576. https://doi.org/10.1021/ja055336t
doi: 10.1021/ja055336t

Auteurs

Jeffrey P Bonin (JP)

Department of Biochemistry and Biophysics, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, USA.

Andrew L Lee (AL)

Department of Biochemistry and Biophysics, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, USA. drewlee@unc.edu.
Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, USA. drewlee@unc.edu.

Articles similaires

Structural basis for molecular assembly of fucoxanthin chlorophyll

Koji Kato, Yoshiki Nakajima, Jian Xing et al.
1.00
Diatoms Photosystem I Protein Complex Chlorophyll Binding Proteins Cryoelectron Microscopy Light-Harvesting Protein Complexes

The conformational landscape of fold-switcher KaiB is tuned to the circadian rhythm timescale.

Hannah K Wayment-Steele, Renee Otten, Warintra Pitsawong et al.
1.00
Rhodobacter sphaeroides Bacterial Proteins Circadian Rhythm Protein Folding Protein Conformation
Substrate Specificity Peptides Catalysis Hydrolysis Protein Conformation
1.00
Humans Pyrophosphatases Protein Conformation Molecular Dynamics Simulation Kinetics

Classifications MeSH