OmicsVolcano: software for intuitive visualization and interactive exploration of high-throughput biological data.

Computational Biology Gene Expression Profiling Genomics User-Computer Interface
Bioinformatics Genomics Proteomics RNA-seq

Journal

STAR protocols
ISSN: 2666-1667
Titre abrégé: STAR Protoc
Pays: United States
ID NLM: 101769501

Informations de publication

Date de publication:
19 03 2021
Historique:
entrez: 3 2 2021
pubmed: 4 2 2021
medline: 4 2 2021
Statut: epublish

Résumé

Advances in omics technologies have generated exponentially larger volumes of biological data; however, their analyses and interpretation are limited to computationally proficient scientists. We created OmicsVolcano, an interactive open-source software tool to enable visualization and exploration of high-throughput biological data, while highlighting features of interest using a volcano plot interface. In contrast to existing tools, our software and user-interface design allow it to be used without requiring any programming skills to generate high-quality and presentation-ready images.

Identifiants

DOI: 10.1016/j.xpro.2020.100279 PMID: 33532728 PMC: PMC7821039
pubmed: 33532728
doi: 10.1016/j.xpro.2020.100279
pii: S2666-1667(20)30266-5
pmc: PMC7821039
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Pagination

100279

Informations de copyright

© 2020 The Author(s).

Déclaration de conflit d'intérêts

The authors declare no competing interests.

Références

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Auteurs

Irina Kuznetsova (I)

Harry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, WA 6009, Australia.
ARC Centre of Excellence in Synthetic Biology, QEII Medical Centre, Nedlands, WA 6009, Australia.
Centre for Medical Research, The University of Western Australia, QEII Medical Centre, Nedlands, WA 6009, Australia.

Artur Lugmayr (A)

Umea University, Department of Computing Science, 901 87 Umea, Sweden.
Edith Cowan University, School of Science, AI and Optimization Research Group, Joondalup, WA 6027, Australia.

Oliver Rackham (O)

Harry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, WA 6009, Australia.
ARC Centre of Excellence in Synthetic Biology, QEII Medical Centre, Nedlands, WA 6009, Australia.
School of Pharmacy and Biomedical Sciences, Curtin University, Bentley, WA 6102, Australia.
Curtin Health Innovation Research Institute, Curtin University, Bentley, WA 6102, Australia.
Telethon Kids Institute, Perth Children's Hospital, Northern Entrance, 15 Hospital Avenue, Nedlands, WA 6009, Australia.

Aleksandra Filipovska (A)

Harry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, WA 6009, Australia.
ARC Centre of Excellence in Synthetic Biology, QEII Medical Centre, Nedlands, WA 6009, Australia.
Centre for Medical Research, The University of Western Australia, QEII Medical Centre, Nedlands, WA 6009, Australia.
Curtin Health Innovation Research Institute, Curtin University, Bentley, WA 6102, Australia.
Telethon Kids Institute, Perth Children's Hospital, Northern Entrance, 15 Hospital Avenue, Nedlands, WA 6009, Australia.
School of Molecular Sciences, The University of Western Australia, Crawley, WA 6009, Australia.

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Classifications MeSH

questionsmedicales.fr › Sciences de l'information › Informatique › Biologie informatique › OmicsVolcano: software for intuitive...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de profil d'expression de gènes › OmicsVolcano: software for intuitive...
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Génétique › Génomique › OmicsVolcano: software for intuitive...
questionsmedicales.fr › Sciences de l'information › Méthodologies informatiques › Logiciel › Interface utilisateur › OmicsVolcano: software for intuitive...