A plasmid DNA-launched SARS-CoV-2 reverse genetics system and coronavirus toolkit for COVID-19 research.


Journal

PLoS biology
ISSN: 1545-7885
Titre abrégé: PLoS Biol
Pays: United States
ID NLM: 101183755

Informations de publication

Date de publication:
02 2021
Historique:
received: 01 09 2020
accepted: 05 01 2021
entrez: 25 2 2021
pubmed: 26 2 2021
medline: 16 3 2021
Statut: epublish

Résumé

The recent emergence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), the underlying cause of Coronavirus Disease 2019 (COVID-19), has led to a worldwide pandemic causing substantial morbidity, mortality, and economic devastation. In response, many laboratories have redirected attention to SARS-CoV-2, meaning there is an urgent need for tools that can be used in laboratories unaccustomed to working with coronaviruses. Here we report a range of tools for SARS-CoV-2 research. First, we describe a facile single plasmid SARS-CoV-2 reverse genetics system that is simple to genetically manipulate and can be used to rescue infectious virus through transient transfection (without in vitro transcription or additional expression plasmids). The rescue system is accompanied by our panel of SARS-CoV-2 antibodies (against nearly every viral protein), SARS-CoV-2 clinical isolates, and SARS-CoV-2 permissive cell lines, which are all openly available to the scientific community. Using these tools, we demonstrate here that the controversial ORF10 protein is expressed in infected cells. Furthermore, we show that the promising repurposed antiviral activity of apilimod is dependent on TMPRSS2 expression. Altogether, our SARS-CoV-2 toolkit, which can be directly accessed via our website at https://mrcppu-covid.bio/, constitutes a resource with considerable potential to advance COVID-19 vaccine design, drug testing, and discovery science.

Identifiants

pubmed: 33630831
doi: 10.1371/journal.pbio.3001091
pii: PBIOLOGY-D-20-02646
pmc: PMC7906417
doi:

Substances chimiques

COVID-19 Vaccines 0
Codon 0
Hydrazones 0
Morpholines 0
Pyrimidines 0
Viral Proteins 0
ACE2 protein, human EC 3.4.17.23
Angiotensin-Converting Enzyme 2 EC 3.4.17.23
Serine Endopeptidases EC 3.4.21.-
TMPRSS2 protein, human EC 3.4.21.-
apilimod GFW2K84S4L

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e3001091

Subventions

Organisme : Medical Research Council
ID : MR/T029188/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UU_12014/12
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/P022642/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_PC_19026
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 201366/Z/16/Z
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UU_12014/2
Pays : United Kingdom
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UU_12014/10
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_PC_20034
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/K024752/1
Pays : United Kingdom
Organisme : Bill & Melinda Gates Foundation
ID : INV-016128
Pays : United States
Organisme : Medical Research Council
ID : MR/V03541X/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UU_00018/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UU_12014/8
Pays : United Kingdom

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

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Auteurs

Suzannah J Rihn (SJ)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Andres Merits (A)

Institute of Technology, University of Tartu, Tartu, Estonia.

Siddharth Bakshi (S)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Matthew L Turnbull (ML)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Arthur Wickenhagen (A)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Akira J T Alexander (AJT)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Carla Baillie (C)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Benjamin Brennan (B)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Fiona Brown (F)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Kirstyn Brunker (K)

Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, United Kingdom.

Steven R Bryden (SR)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Kerry A Burness (KA)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Stephen Carmichael (S)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Sarah J Cole (SJ)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Vanessa M Cowton (VM)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Paul Davies (P)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Chris Davis (C)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Giuditta De Lorenzo (G)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Claire L Donald (CL)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Mark Dorward (M)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

James I Dunlop (JI)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Matthew Elliott (M)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Mazigh Fares (M)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Ana da Silva Filipe (A)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Joseph R Freitas (JR)

Emerging Viruses, Inflammation and Therapeutics Group, Menzies Health Institute Queensland, Griffith University, Gold Coast, Queensland, Australia.

Wilhelm Furnon (W)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Rommel J Gestuveo (RJ)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.
Division of Biological Sciences, College of Arts and Sciences, University of the Philippines Visayas, Miagao, Iloilo, Philippines.

Anna Geyer (A)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Daniel Giesel (D)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Daniel M Goldfarb (DM)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Nicola Goodman (N)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Rory Gunson (R)

West of Scotland Specialist Virology Centre, Glasgow, United Kingdom.

C James Hastie (CJ)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Vanessa Herder (V)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Joseph Hughes (J)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Clare Johnson (C)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Natasha Johnson (N)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Alain Kohl (A)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Karen Kerr (K)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Hannah Leech (H)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Laura Sandra Lello (LS)

Institute of Technology, University of Tartu, Tartu, Estonia.

Kathy Li (K)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Gauthier Lieber (G)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Xiang Liu (X)

Emerging Viruses, Inflammation and Therapeutics Group, Menzies Health Institute Queensland, Griffith University, Gold Coast, Queensland, Australia.

Rajendra Lingala (R)

Indian Immunologicals Ltd (IIL), Rakshapuram, Gachibowli Post, Hyderabad Telangana, India.

Colin Loney (C)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Daniel Mair (D)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Marion J McElwee (MJ)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Steven McFarlane (S)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Jenna Nichols (J)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Kyriaki Nomikou (K)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Anne Orr (A)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Richard J Orton (RJ)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Massimo Palmarini (M)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Yasmin A Parr (YA)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Rute Maria Pinto (RM)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Samantha Raggett (S)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Elaine Reid (E)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

David L Robertson (DL)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Jamie Royle (J)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Natalia Cameron-Ruiz (N)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

James G Shepherd (JG)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Katherine Smollett (K)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Douglas G Stewart (DG)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Meredith Stewart (M)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Elena Sugrue (E)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Agnieszka M Szemiel (AM)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Aislynn Taggart (A)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Emma C Thomson (EC)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Lily Tong (L)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Leah S Torrie (LS)

Drug Discovery Unit (DDU), Wellcome Centre for Anti-Infectives Research, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Rachel Toth (R)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Margus Varjak (M)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Sainan Wang (S)

Institute of Technology, University of Tartu, Tartu, Estonia.

Stuart G Wilkinson (SG)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Paul G Wyatt (PG)

Drug Discovery Unit (DDU), Wellcome Centre for Anti-Infectives Research, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Eva Zusinaite (E)

Institute of Technology, University of Tartu, Tartu, Estonia.

Dario R Alessi (DR)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom.

Arvind H Patel (AH)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Ali Zaid (A)

Emerging Viruses, Inflammation and Therapeutics Group, Menzies Health Institute Queensland, Griffith University, Gold Coast, Queensland, Australia.
School of Medical Sciences, Griffith University, Gold Coast, Queensland, Australia.

Sam J Wilson (SJ)

MRC-University of Glasgow Centre for Virus Research (CVR), Glasgow, United Kingdom.

Suresh Mahalingam (S)

Emerging Viruses, Inflammation and Therapeutics Group, Menzies Health Institute Queensland, Griffith University, Gold Coast, Queensland, Australia.

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Classifications MeSH