Phylogenetic structure of Shiga toxin-producing
Shiga toxin-producing Escherichia coli O157:H7
surveillance
whole genome sequencing
Journal
Microbial genomics
ISSN: 2057-5858
Titre abrégé: Microb Genom
Pays: England
ID NLM: 101671820
Informations de publication
Date de publication:
03 2021
03 2021
Historique:
pubmed:
16
3
2021
medline:
29
9
2021
entrez:
15
3
2021
Statut:
ppublish
Résumé
Sequence similarity of pathogen genomes can infer the relatedness between isolates as the fewer genetic differences identified between pairs of isolates, the less time since divergence from a common ancestor. Clustering based on hierarchical single linkage clustering of pairwise SNP distances has been employed to detect and investigate outbreaks. Here, we evaluated the evidence-base for the interpretation of phylogenetic clusters of Shiga toxin-producing
Identifiants
pubmed: 33720818
doi: 10.1099/mgen.0.000544
pmc: PMC8190602
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : Department of Health
Pays : United Kingdom
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