Elucidation of transient protein-protein interactions within carrier protein-dependent biosynthesis.
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase
/ metabolism
Acetyltransferases
/ metabolism
Acyl Carrier Protein
/ metabolism
Alcohol Oxidoreductases
/ metabolism
Binding Sites
Enoyl-(Acyl-Carrier-Protein) Reductase (NADH)
/ metabolism
Escherichia coli
/ enzymology
Escherichia coli Proteins
/ metabolism
Fatty Acid Synthase, Type II
/ metabolism
Fatty Acids
/ biosynthesis
Lysophospholipase
/ metabolism
Molecular Docking Simulation
Periplasmic Proteins
/ metabolism
Protein Binding
Protein Interaction Domains and Motifs
Proton Magnetic Resonance Spectroscopy
Journal
Communications biology
ISSN: 2399-3642
Titre abrégé: Commun Biol
Pays: England
ID NLM: 101719179
Informations de publication
Date de publication:
16 03 2021
16 03 2021
Historique:
received:
15
09
2020
accepted:
11
02
2021
entrez:
17
3
2021
pubmed:
18
3
2021
medline:
11
8
2021
Statut:
epublish
Résumé
Fatty acid biosynthesis (FAB) is an essential and highly conserved metabolic pathway. In bacteria, this process is mediated by an elaborate network of protein•protein interactions (PPIs) involving a small, dynamic acyl carrier protein that interacts with dozens of other partner proteins (PPs). These PPIs have remained poorly characterized due to their dynamic and transient nature. Using a combination of solution-phase NMR spectroscopy and protein-protein docking simulations, we report a comprehensive residue-by-residue comparison of the PPIs formed during FAB in Escherichia coli. This technique describes and compares the molecular basis of six discrete binding events responsible for E. coli FAB and offers insights into a method to characterize these events and those in related carrier protein-dependent pathways.
Identifiants
pubmed: 33727677
doi: 10.1038/s42003-021-01838-3
pii: 10.1038/s42003-021-01838-3
pmc: PMC7966745
doi:
Substances chimiques
Acyl Carrier Protein
0
Escherichia coli Proteins
0
Fatty Acids
0
Periplasmic Proteins
0
acpP protein, E coli
0
Alcohol Oxidoreductases
EC 1.1.-
acetoacetyl-CoA reductase
EC 1.1.1.36
Enoyl-(Acyl-Carrier-Protein) Reductase (NADH)
EC 1.3.1.9
fabI protein, E coli
EC 1.3.1.9
Acetyltransferases
EC 2.3.1.-
fabF protein, E coli
EC 2.3.1.179
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase
EC 2.3.1.41
FabB protein, E coli
EC 2.3.1.41
Lysophospholipase
EC 3.1.1.5
tesA protein, E coli
EC 3.1.2.-
Fatty Acid Synthase, Type II
EC 6.-
Types de publication
Comparative Study
Journal Article
Research Support, N.I.H., Extramural
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
340Subventions
Organisme : NIGMS NIH HHS
ID : R01 GM095970
Pays : United States
Organisme : NIAID NIH HHS
ID : R21 AI156484
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM131881
Pays : United States
Organisme : NIGMS NIH HHS
ID : T32 GM112584
Pays : United States
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