Elucidation of transient protein-protein interactions within carrier protein-dependent biosynthesis.


Journal

Communications biology
ISSN: 2399-3642
Titre abrégé: Commun Biol
Pays: England
ID NLM: 101719179

Informations de publication

Date de publication:
16 03 2021
Historique:
received: 15 09 2020
accepted: 11 02 2021
entrez: 17 3 2021
pubmed: 18 3 2021
medline: 11 8 2021
Statut: epublish

Résumé

Fatty acid biosynthesis (FAB) is an essential and highly conserved metabolic pathway. In bacteria, this process is mediated by an elaborate network of protein•protein interactions (PPIs) involving a small, dynamic acyl carrier protein that interacts with dozens of other partner proteins (PPs). These PPIs have remained poorly characterized due to their dynamic and transient nature. Using a combination of solution-phase NMR spectroscopy and protein-protein docking simulations, we report a comprehensive residue-by-residue comparison of the PPIs formed during FAB in Escherichia coli. This technique describes and compares the molecular basis of six discrete binding events responsible for E. coli FAB and offers insights into a method to characterize these events and those in related carrier protein-dependent pathways.

Identifiants

pubmed: 33727677
doi: 10.1038/s42003-021-01838-3
pii: 10.1038/s42003-021-01838-3
pmc: PMC7966745
doi:

Substances chimiques

Acyl Carrier Protein 0
Escherichia coli Proteins 0
Fatty Acids 0
Periplasmic Proteins 0
acpP protein, E coli 0
Alcohol Oxidoreductases EC 1.1.-
acetoacetyl-CoA reductase EC 1.1.1.36
Enoyl-(Acyl-Carrier-Protein) Reductase (NADH) EC 1.3.1.9
fabI protein, E coli EC 1.3.1.9
Acetyltransferases EC 2.3.1.-
fabF protein, E coli EC 2.3.1.179
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase EC 2.3.1.41
FabB protein, E coli EC 2.3.1.41
Lysophospholipase EC 3.1.1.5
tesA protein, E coli EC 3.1.2.-
Fatty Acid Synthase, Type II EC 6.-

Types de publication

Comparative Study Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

340

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM095970
Pays : United States
Organisme : NIAID NIH HHS
ID : R21 AI156484
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM131881
Pays : United States
Organisme : NIGMS NIH HHS
ID : T32 GM112584
Pays : United States

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Auteurs

Thomas G Bartholow (TG)

Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, USA.

Terra Sztain (T)

Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, USA.

Ashay Patel (A)

Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, USA.

D John Lee (DJ)

Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, USA.
Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.

Megan A Young (MA)

Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, USA.

Ruben Abagyan (R)

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, USA.

Michael D Burkart (MD)

Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, USA. mburkart@ucsd.edu.

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