High-resolution mapping of the Mov-1 locus in wheat by combining radiation hybrid (RH) and recombination-based mapping approaches.
Journal
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik
ISSN: 1432-2242
Titre abrégé: Theor Appl Genet
Pays: Germany
ID NLM: 0145600
Informations de publication
Date de publication:
Jul 2021
Jul 2021
Historique:
received:
04
01
2021
accepted:
29
03
2021
pubmed:
9
4
2021
medline:
23
9
2021
entrez:
8
4
2021
Statut:
ppublish
Résumé
This work reports a quick method that integrates RH mapping and genetic mapping to map the dominant Mov-1 locus to a 1.1-Mb physical interval with a small number of candidate genes. Bread wheat is an important crop for global human population. Identification of genes and alleles controlling agronomic traits is essential toward sustainably increasing crop production. The unique multi-ovary (MOV) trait in wheat holds potential for improving yields and is characterized by the formation of 2-3 grains per spikelet. The genetic basis of the multi-ovary trait is known to be monogenic and dominant in nature. Its precise mapping and functional characterization is critical to utilizing this trait in a feasible manner. Previous mapping efforts of the locus controlling multiple ovary/pistil formation in the hexaploid wheat have failed to produce a consensus for a particular chromosome. We describe a mapping strategy integrating radiation hybrid mapping and high-resolution genetic mapping to locate the chromosomal position of the Mov-1 locus in hexaploid wheat. We used RH mapping approach using a panel of 188 lines to map the Mov-1 locus in the terminal part of long arm of wheat chromosome 2D with a map resolution of 1.67 Mb/cR
Identifiants
pubmed: 33830295
doi: 10.1007/s00122-021-03827-w
pii: 10.1007/s00122-021-03827-w
doi:
Substances chimiques
Genetic Markers
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
2303-2314Subventions
Organisme : National Institute of Food and Agriculture
ID : 2020-67013-31460
Références
Abhinandan K, Skori L, Stanic M, Hickerson NMN, Jamshed M, Samuel MA (2018) Abiotic stress signaling in wheat—an inclusive overview of hormonal interactions during abiotic stress responses in wheat. Front Plant Sci. https://doi.org/10.3389/fpls.2018.00734
doi: 10.3389/fpls.2018.00734
pubmed: 29942321
pmcid: 6004395
Adamski NM, Borrill P, Brinton J, Harrington S, Marchal C, Bentley AR, Bovill WD, Cattivelli L, Cockram J, Contreras-Moreira B, Ford B, Ghosh S, Harwood W, Hassani-Pak K, Hayta S, Hickey LT, Kanyuka K, King J, Maccaferri M, Naamati G, Pozniak CJ, Ramirez-Gonzalez RH, Sansaloni C, Trevaskis B, Wingen LU, Wulff BB, Uauy C (2019) A roadmap for gene functional characterization in wheat. PeerJ Preprints 7:e26877v2
Asseng S, Guarin JR, Raman M, Monje O, Kiss G, Despommier DD, Meggers FM, Gauthier PPG (2020) Wheat yield potential in controlled-environment vertical farms. ProcNatlAcadSci USA 117:19131–19135
Bailey-Serres J, Parker JE, Ainsworth EA, Oldroyd GED, Schroeder JI (2019) Genetic strategies for improving crop yields. Nature 575:109–118
pubmed: 31695205
pmcid: 7024682
Barazesh S, McSteen P (2008) Hormonal control of grass inflorescence development. Trends Plant Sci 13:656–662
pubmed: 18986827
Bassi FM, Kumar A, Zhang Q, Paux E, Huttner E, Kilian A, Dizon R, Feuillet C, Xu SS, Kianian SF (2013) Radiation hybrid QTL mapping of Tdes2 involved in the first meiotic division of wheat. TheorAppl Genet 126:1977–1990
Beres BL, Hatfield JL, Kirkegaard JA, Eigenbrode SD, Pan WL, Lollato RP, Hunt JR, Strydhorst S, Porker K, Lyon D, Ransom J, Wiersma J (2020) Toward a better understanding of genotype × environment × management interactions—a global wheat initiative agronomic research strategy. Front Plant Sci 11:828
pubmed: 32612624
pmcid: 7308648
Braun HJ, Atlin G, Payne T (2010) Multi-location testing as a tool to identify plant response to global climate change. Climate Change Crop Prod 1:115–138
Brisson N, Gate P, Gouache D, Charmet G, Oury F-X, Huard F (2010) Why are wheat yields stagnating in Europe? A comprehensive data analysis for France. Field Crops Res 119:201–212
Broman KW, Wu H, Sen S, Churchill GA (2003) R/qtl: QTL mapping in experimental crosses. Bioinformatics 19:889–890
pubmed: 12724300
Charmet G (2011) Wheat domestication: lessons for the future. ComptesRendusBiol 334:212–220
de Givry S, Bouchez M, Chabrier P, Milan D, Schiex T (2005) Carhta Gene: multipopulation integrated genetic and radiation hybrid mapping. Bioinformatics 21:1703–1704
pubmed: 15598829
Dixon J, Braun HJ, Crouch J (2009) Transitioning wheat research to serve the future needs of the developing world. In: Dixon J, Braun HJ, Kosina P (eds) Wheat facts and futures. CIMMYT, Mexico, pp 1–19
Edgerton MD (2009) Increasing crop productivity to meet global needs for feed, food, and fuel. Plant Physiol 149:7–13
pubmed: 19126690
pmcid: 2613695
Endo TR, Gill BS (1996) The deletion stocks of common wheat. J Hered 87:295–307
Evenson RE, Gollin D (2003) Assessing the impact of the green revolution, 1960 to 2000. Science 300:758–762
pubmed: 12730592
Gardiner L-J, Wingen LU, Bailey P, Joynson R, Brabbs T, Wright J, Higgins JD, Hall N, Griffiths S, Clavijo BJ, Hall A (2019) Analysis of the recombination landscape of hexaploid bread wheat reveals genes controlling recombination and gene conversion frequency. Genome Biol 20:69
pubmed: 30982471
pmcid: 6463664
Guo J, Zhang G, Song Y, Ma S, Niu N, Wang J (2019) Comparative transcriptome profiling of multi-ovary wheat under heterogeneous cytoplasm suppression. Sci Rep 9:1–10
Hawkesford MJ, Araus J-L, Park R, Calderini D, Miralles D, Shen T, Zhang J, Parry MA (2013) Prospects of doubling global wheat yields. Food Energy Sec 2:34–48
IWGSC (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science 361:eaar7191
Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer Klaus FX, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu P, Wang J, Zou H, Zhang R, Xu J, Gao J, Middleton C, Quan Z, Liu G, Wang J, International Wheat Genome Sequencing Consortium, Yang H, Liu X, He Z, Mao L, Wang J (2013) Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature 496:91–95
pubmed: 23535592
Kumar A, Seetan R, Mergoum M, Tiwari VK, Iqbal MJ, Wang Y, Al-Azzam O, Šimková H, Luo M-C, Dvorak J, Gu YQ, Denton A, Kilian A, Lazo GR, Kianian SF (2015) Radiation hybrid maps of the D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes. BMC Geno. https://doi.org/10.1186/s12864-015-2030-2
doi: 10.1186/s12864-015-2030-2
Ling H-Q, Zhao S, Liu D, Wang J, Sun H, Zhang C, Fan H, Li D, Dong L, Tao Y, Gao C, Wu H, Li Y, Cui Y, Guo X, Zheng S, Wang B, Yu K, Liang Q, Yang W, Lou X, Chen J, Feng M, Jian J, Zhang X, Luo G, Jiang Y, Liu J, Wang Z, Sha Y, Zhang B, Wu H, Tang D, Shen Q, Xue P, Zou S, Wang X, Liu X, Wang F, Yang Y, An X, Dong Z, Zhang K, Zhang X, Luo M-C, Dvorak J, Tong Y, Wang J, Yang H, Li Z, Wang D, Zhang A, Jun W (2013) Draft genome of the wheat A-genome progenitor Triticum urartu. Nature 496:87–90
pubmed: 23535596
Luo M-C, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, Huo N, Wang Y, Wang J, Chen S, Jorgensen CM, Zhang Y, McGuire PE, Pasternak S, Stein JC, Kramer MD, McCombie WR, Kianian SF, Martis MM, Mayer KFX, Sehgal SK, Li W, Gill BS, Bevan MW, Šimková H, Doležel J, Weining S, Lazo GR, Anderson OD, Dvorak J (2013) A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. ProcNatlAcadSci USA 110:7940–7945
Luo MC, Gu YQ, Puiu D, Wang H, Twardziok SO, Deal KR, Huo N, Zhu T, Wang L, Wang Y, McGuire PE, Liu S, Long H, Ramasamy RK, Rodriguez JC, Van SL, Yuan L, Wang Z, Xia Z, Xiao L, Anderson OD, Ouyang S, Liang S, Zimin AV, Pertea G, Qi P, Bennetzen JL, Dai X, Dawson MW, Müller HG, Kugler K, Rivarola-Duarte L, Spannagl M, Mayer KFX, Lu FH, Bevan MW, Leroy P, Li P, You FM, Sun Q, Liu Z, Lyons E, Wicker T, Salzberg SL, Devos KM, Dvořák J (2017) Genome sequence of the progenitor of the wheat D genome Aegilops tauschii. Nature 551:498–502
pubmed: 29143815
pmcid: 7416625
Miki Y, Yoshida K, Mizuno N, Nasuda S, Sato K, Takumi S (2019) Origin of wheat B-genome chromosomes inferred from RNA sequencing analysis of leaf transcripts from section Sitopsis species of Aegilops. DNA Res 26:171–182
pubmed: 30715317
pmcid: 6476730
Mueller ND, Gerber JS, Johnston M, Ray DK, Ramankutty N, Foley JA (2012) Closing yield gaps through nutrient and water management. Nature 490:254–257
pubmed: 22932270
Murai K, Takumi S, Koga H, Ogihara Y (2002) Pistillody, homeotic transformation of stamens into pistil-like structures, caused by nuclear–cytoplasm interaction in wheat. Plant J 29:169–181
pubmed: 11851918
Nadolska-Orczyk A, Rajchel IK, Orczyk W, Gasparis S (2017) Major genes determining yield-related traits in wheat and barley. TheorAppl Genet 130:1081–1098
Ortiz R, Braun H-J, Crossa J, Crouch JH, Davenport G, Dixon J, Dreisigacker S, Duveiller E, He Z, Huerta J, Joshi AK, Kishii M, Kosina P, Manes Y, Mezzalama M, Morgounov A, Murakami J, Nicol J, Ortiz Ferrara G, Ortiz-Monasterio JI, Payne TS, Peña RJ, Reynolds MP, Sayre KD, Sharma RC, Singh RP, Wang J, Warburton M, Wu H, Iwanaga M (2008) Wheat genetic resources enhancement by the International Maize and Wheat Improvement Center (CIMMYT). Genet Resour Crop Evol 55:1095–1140
Ouellette LA, Reid RW, Blanchard SG, Brouwer CR (2018) LinkageMapView-rendering high-resolution linkage and QTL maps. Bioinformatics 34:306–307
pubmed: 28968706
Peng ZS, Jun Y, Wei SH, Zeng JH (2004) Characterization of the common wheat (Triticum aestivum L.) mutation line producing three pistils in a floret. Hereditas 141:15–18
pubmed: 15383067
Peng Z-S, Martinek P, Kosuge K, Kuboyama T, Watanabe N (2008) Genetic mapping of a mutant gene producing three pistils per floret in common wheat. J Appl Genetics 49:135–139
Pingali PL (2012) Green revolution: impacts, limits, and the path ahead. ProcNatlAcadSci USA 109:12302–12308
Ramírez-González RH, Borrill P, Lang D, Harrington SA, Brinton J, Venturini L, Davey M, Jacobs J, van Ex F, Pasha A, Khedikar Y, Robinson SJ, Cory AT, Florio T, Concia L, Juery C, Schoonbeek H, Steuernagel B, Xiang D, Ridout CJ, Chalhoub B, Mayer KFX, Benhamed M, Latrasse D, Bendahmane A, Wulff BBH, Appels R, Tiwari V, Datla R, Choulet F, Pozniak CJ, Provart NJ, Sharpe AG, Paux E, Spannagl M, Bräutigam A, Uauy C (2018) The transcriptional landscape of polyploid wheat. Science 361:eaar6089
pubmed: 30115782
Reynolds MP, van Ginkel M, Ribaut J (2000) Avenues for genetic modification of radiation use efficiency in wheat. J Exp Bot 51:459–473
pubmed: 10938854
Reynolds M, Foulkes J, Furbank R, Griffiths S, King J, Murchie E, Parry M, Slafer G (2012) Achieving yield gains in wheat. Plant Cell Environ 35:1799–1823
pubmed: 22860982
Riera-Lizarazu O, Leonard JM, Tiwari VK, Kianian SF (2010) A method to produce radiation hybrids for the D-genome chromosomes of wheat (Triticum aestivum L.). Cytogenet Genome Res 129:234–240
pubmed: 20501975
Saintenac C, Falque M, Martin OC, Paux E, Feuillet C, Sourdille P (2009) Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L). Genetics 181:393–403
pubmed: 19064706
pmcid: 2644935
Senapati N, Semenov MA (2020) Large genetic yield potential and genetic yield gap estimated for wheat in Europe. Global Food Sec 24:100340
Shiferaw B, Smale M, Braun H-J, Duveiller E, Reynolds M, Muricho G (2013) Crops that feed the world 10 Past successes and future challenges to the role played by wheat in global food security. Food Sec 5:291–317
Simmonds J, Scott P, Brinton J, Mestre TC, Bush M, del Blanco A, Dubcovsky J, Uauy C (2016) A splice acceptor site mutation in TaGW2-A1 increases thousand grain weight in tetraploid and hexaploid wheat through wider and longer grains. TheorAppl Genet 129:1099–1112
Skovmand B, Reynolds MP, Delacy IH (2001) Searching genetic resources for physiological traits with potential for increasing yield. In: Reynolds MP, Ortiz-Monasterio JI, McNab A (eds) Application of physiology in wheat breeding. CIMMT, Mexico, pp 124–135
Tester M, Langridge P (2010) Breeding technologies to increase crop production in a changing world. Science 327:818–822
pubmed: 20150489
Thompson BE, Hake S (2009) Translational biology: from Arabidopsis flowers to grass inflorescence architecture. Plant Physiol 149:38
pubmed: 19126693
pmcid: 2613731
Tiwari VK, Riera-Lizarazu O, Gunn HL et al (2012) Endosperm tolerance of paternal aneuploidy allows radiation hybrid mapping of the wheat D-genome and a measure of γ ray-induced chromosome breaks. PLoS ONE 7:e48815
pubmed: 23144983
pmcid: 3492231
Tiwari VK, Heesacker A, Riera-Lizarazu O, Gunn H, Wang S, Wang Y, Gu YQ, Paux E, Koo D-H, Kumar A, Luo M-C, Lazo G, Zemetra R, Akhunov E, Friebe B, Poland J, Gill BS, Kianian S, Leonard JM (2016) A whole-genome, radiation hybrid mapping resource of hexaploid wheat. Plant J 86:195–207
pubmed: 26945524
Wang Z, Xu D, Ji J, Wang J, Wang M, Ling H, Sun G, Li J (2009) Genetic analysis and molecular markers associated with multi-gynoecia (Mg) gene in Trigrain wheat. Can J Plant Sci 89:845–850
Wang Y, Tiwari VK, Rawat N, Gill BS, Huo N, You FM, Coleman-Derr D, Gu YQ (2016) GSP: a web-based platform for designing genome-specific primers in polyploids. Bioinformatics 32:2382–2383
pubmed: 27153733
Whitford R, Fleury D, Reif JC, Garcia M, Okada T, Korzun V, Langridge P (2013) Hybrid breeding in wheat: technologies to improve hybrid wheat seed production. J Exp Bot 64:5411–5428
pubmed: 24179097
Williams K, Sorrells ME (2014) Three-dimensional seed size and shape QTL in hexaploid wheat (Triticum aestivum L.) populations. Crop Sci 54:98–110
Yang Z, Peng Z, Wei S, Yang ZJ, Peng ZS, Wei SH, Liao ML, Yan Y, Jang ZY (2015) Pistillody mutant reveals key insights into stamen and pistil development in wheat (Triticum aestivum L.). BMC Geno 16:211
Yang Z, Chen Z, Peng Z, Yu Y, Liao M, Wei S (2017) Development of a high-density linkage map and mapping of the three-pistil gene (Pis1) in wheat using GBS markers. BMC Geno 18:567
Yu ZY, Luo Q, Peng ZS, Wei SH, Yang ZJ, Yamamoto N (2020) Genetic mapping of the three-pistil gene Pis1 in an F2 population derived from a synthetic hexaploid wheat using multiple molecular marker systems. Cere Res Com 49:31–36
Zhang G, Mergoum M, Kianian S, Meyer DW, Simsek S, Singh PK (2009) Genetic relationship and QTL association between kernel shattering and agronomic traits in wheat. Crop Sci 49:451–458
Zhang L, Zhao Y-L, Gao L-F, Zhao G-Y, Zhou R-H, Zhang B-S, Jia J-Z (2012) TaCKX6-D1, the ortholog of rice OsCKX2, is associated with grain weight in hexaploid wheat. New Phyto 195(3):574–584
Zhu X, Ni Y, He R, Jiang Y, Li Q, Niu J (2019) Genetic mapping and expressivity of a wheat multi-pistil gene in mutant 12TP. J IntegrAgric 18:532–538