Three-dimensional CRISPR screening reveals epigenetic interaction with anti-angiogenic therapy.


Journal

Communications biology
ISSN: 2399-3642
Titre abrégé: Commun Biol
Pays: England
ID NLM: 101719179

Informations de publication

Date de publication:
15 07 2021
Historique:
received: 14 12 2020
accepted: 23 06 2021
entrez: 16 7 2021
pubmed: 17 7 2021
medline: 12 11 2021
Statut: epublish

Résumé

Angiogenesis underlies development, physiology and pathogenesis of cancer, eye and cardiovascular diseases. Inhibiting aberrant angiogenesis using anti-angiogenic therapy (AAT) has been successful in the clinical treatment of cancer and eye diseases. However, resistance to AAT inevitably occurs and its molecular basis remains poorly understood. Here, we uncover molecular modifiers of the blood endothelial cell (EC) response to a widely used AAT bevacizumab by performing a pooled genetic screen using three-dimensional microcarrier-based cell culture and CRISPR-Cas9. Functional inhibition of the epigenetic reader BET family of proteins BRD2/3/4 shows unexpected mitigating effects on EC survival and/or proliferation upon VEGFA blockade. Moreover, transcriptomic and pathway analyses reveal an interaction between epigenetic regulation and anti-angiogenesis, which may affect chromosomal structure and activity in ECs via the cell cycle regulator CDC25B phosphatase. Collectively, our findings provide insight into epigenetic regulation of the EC response to VEGFA blockade and may facilitate development of quality biomarkers and strategies for overcoming resistance to AAT.

Identifiants

pubmed: 34267311
doi: 10.1038/s42003-021-02397-3
pii: 10.1038/s42003-021-02397-3
pmc: PMC8282794
doi:

Substances chimiques

Angiogenesis Inhibitors 0
Bevacizumab 2S9ZZM9Q9V

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

878

Informations de copyright

© 2021. The Author(s).

Références

Bioinformatics. 2014 Apr 1;30(7):923-30
pubmed: 24227677
EMBO Rep. 2017 Jun;18(6):894-905
pubmed: 28377371
Genome Biol. 2014;15(12):550
pubmed: 25516281
Nat Rev Mol Cell Biol. 2017 Aug;18(8):477-494
pubmed: 28537573
Nucleic Acids Res. 2015 Apr 20;43(7):e47
pubmed: 25605792
Sci Rep. 2016 Apr 05;6:23770
pubmed: 27044328
Dev Cell. 2007 Jan;12(1):17-30
pubmed: 17199038
Nat Med. 2018 Aug;24(8):1277-1289
pubmed: 29988129
Angiogenesis. 2017 May;20(2):245-267
pubmed: 28378227
Nat Rev Drug Discov. 2016 Jun;15(6):385-403
pubmed: 26775688
Bioinformatics. 2015 Jan 15;31(2):166-9
pubmed: 25260700
N Engl J Med. 2018 Jun 14;378(24):2288-2301
pubmed: 29863955
Nat Protoc. 2016 Sep;11(9):1650-67
pubmed: 27560171
Nat Commun. 2017 Aug 29;8(1):383
pubmed: 28851877
Biotechniques. 2014 Jun 01;56(6):331-3
pubmed: 24924394
Mol Cell. 2017 May 18;66(4):517-532.e9
pubmed: 28525743
Dev Cell. 2016 Apr 18;37(2):114-25
pubmed: 27093081
Nat Commun. 2017 Sep 28;8(1):726
pubmed: 28959057
Nature. 2016 Jan 21;529(7586):413-417
pubmed: 26735014
Biotechniques. 2017 Jul 1;63(1):34-36
pubmed: 28701146
Mol Cancer Ther. 2016 May;15(5):1018-28
pubmed: 26908627
Mol Cell. 2017 Jan 19;65(2):231-246
pubmed: 28017591
Nat Rev Cancer. 2017 Aug;17(8):457-474
pubmed: 28706266
Nat Rev Genet. 2015 May;16(5):299-311
pubmed: 25854182
Nat Biotechnol. 2016 Feb;34(2):184-191
pubmed: 26780180
Nat Biotechnol. 2014 Apr;32(4):347-55
pubmed: 24584096
Cancer Discov. 2018 Jan;8(1):24-36
pubmed: 29263030
Mol Cell. 2017 Jul 6;67(1):5-18.e19
pubmed: 28673542
Nature. 2011 Oct 02;478(7370):529-33
pubmed: 21964340
Cell. 2009 May 1;137(3):472-84
pubmed: 19410544
Science. 2020 Apr 24;368(6489):387-394
pubmed: 32193360
Mol Cancer Ther. 2017 Nov;16(11):2410-2421
pubmed: 28830982
Respirology. 2017 Jan;22(1):157-164
pubmed: 27539364
Cell. 2009 May 1;137(3):485-97
pubmed: 19410545
Nature. 2017 Apr 13;544(7649):250-254
pubmed: 28371798
Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):2144-2149
pubmed: 29444854
Genome Biol. 2014;15(12):554
pubmed: 25476604
Arterioscler Thromb Vasc Biol. 2015 Nov;35(11):2297-306
pubmed: 26404488
Nat Protoc. 2017 Apr;12(4):828-863
pubmed: 28333914
Bioinformatics. 2010 Jan 1;26(1):139-40
pubmed: 19910308
Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50
pubmed: 16199517
Lancet. 2016 Jul 30;388(10043):518-29
pubmed: 26853587
Nature. 2010 Dec 23;468(7327):1067-73
pubmed: 20871596
Genome Biol. 2014 Feb 03;15(2):R29
pubmed: 24485249
Nucleic Acids Res. 2009 Jan;37(Database issue):D674-9
pubmed: 18832364
Cell Rep. 2017 Feb 28;18(9):2162-2174
pubmed: 28249162
Nature. 2010 Dec 23;468(7327):1119-23
pubmed: 21068722
Nat Commun. 2017 Nov 22;8(1):1707
pubmed: 29167426
J Biotechnol. 2012 Aug 31;160(3-4):202-13
pubmed: 22465290
Curr Protoc Cell Biol. 2011 Mar;Chapter 26:Unit 26.8
pubmed: 21400699
Biochem Soc Trans. 2014 Dec;42(6):1569-75
pubmed: 25399572
Cell. 2014 Jul 17;158(2):397-411
pubmed: 25036634
Front Pharmacol. 2020 Jul 10;11:1043
pubmed: 32765266
Nature. 2015 Sep 24;525(7570):538-42
pubmed: 26367796
Clin Cancer Res. 2014 Feb 15;20(4):912-25
pubmed: 24297863
Oncogene. 2017 Jan 5;36(1):122-132
pubmed: 27292261
Mol Cell. 2014 Oct 23;56(2):219-231
pubmed: 25263595
Sci Transl Med. 2016 Jun 29;8(345):345ra89
pubmed: 27358499
Curr Opin Immunol. 2018 Aug;53:152-160
pubmed: 29778674
Nat Rev Mol Cell Biol. 2007 Jun;8(6):464-78
pubmed: 17522591
Cells Tissues Organs. 2007;185(1-3):20-8
pubmed: 17587804
Nat Commun. 2016 Aug 30;7:12624
pubmed: 27571927
Int J Clin Oncol. 2016 Apr;21(2):206-212
pubmed: 26879652

Auteurs

Michael Y He (MY)

Tumour Angiogenesis and Microenvironment Program, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia.
Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.

Michael M Halford (MM)

Tumour Angiogenesis and Microenvironment Program, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.

Ruofei Liu (R)

Tumour Angiogenesis and Microenvironment Program, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia.

James P Roy (JP)

Tumour Angiogenesis and Microenvironment Program, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia.

Zoe L Grant (ZL)

Epigenetics and Development Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Department of Medical Biology, The University of Melbourne, Parkville, VIC, Australia.
Gladstone Institutes, San Francisco, CA, USA.

Leigh Coultas (L)

Epigenetics and Development Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Department of Medical Biology, The University of Melbourne, Parkville, VIC, Australia.

Niko Thio (N)

Bioinformatics Core, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.

Omer Gilan (O)

Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia.
Translational Haematology Program, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Australian Centre for Blood Diseases, Monash University, Melbourne, VIC, Australia.

Yih-Chih Chan (YC)

Translational Haematology Program, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.

Mark A Dawson (MA)

Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia.
Translational Haematology Program, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Centre for Cancer Research, The University of Melbourne, Parkville, VIC, Australia.
Department of Haematology, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.

Marc G Achen (MG)

Tumour Angiogenesis and Microenvironment Program, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia.
Department of Surgery, Royal Melbourne Hospital, The University of Melbourne, Parkville, VIC, Australia.
St Vincent's Institute of Medical Research, Melbourne, VIC, Australia.

Steven A Stacker (SA)

Tumour Angiogenesis and Microenvironment Program, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia. Steven.Stacker@petermac.org.
Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia. Steven.Stacker@petermac.org.
Department of Surgery, Royal Melbourne Hospital, The University of Melbourne, Parkville, VIC, Australia. Steven.Stacker@petermac.org.

Articles similaires

Animals Epigenesis, Genetic DNA Methylation Skates, Fish CpG Islands
Schizosaccharomyces Meiosis Schizosaccharomyces pombe Proteins Mitosis Epigenesis, Genetic
Exosomes Humans Endothelial Cells Animals Epithelial-Mesenchymal Transition

Classifications MeSH