Microdiversity characterizes prevalent phylogenetic clades in the glacier-fed stream microbiome.
Journal
The ISME journal
ISSN: 1751-7370
Titre abrégé: ISME J
Pays: England
ID NLM: 101301086
Informations de publication
Date de publication:
03 2022
03 2022
Historique:
received:
21
12
2020
accepted:
02
09
2021
revised:
14
08
2021
pubmed:
16
9
2021
medline:
12
3
2022
entrez:
15
9
2021
Statut:
ppublish
Résumé
Glacier-fed streams (GFSs) are extreme and rapidly vanishing ecosystems, and yet they harbor diverse microbial communities. Although our understanding of the GFS microbiome has recently increased, we do not know which microbial clades are ecologically successful in these ecosystems, nor do we understand potentially underlying mechanisms. Ecologically successful clades should be more prevalent across GFSs compared to other clades, which should be reflected as clade-wise distinctly low phylogenetic turnover. However, methods to assess such patterns are currently missing. Here we developed and applied a novel analytical framework, "phyloscore analysis", to identify clades with lower spatial phylogenetic turnover than other clades in the sediment microbiome across twenty GFSs in New Zealand. These clades constituted up to 44% and 64% of community α-diversity and abundance, respectively. Furthermore, both their α-diversity and abundance increased as sediment chlorophyll a decreased, corroborating their ecological success in GFS habitats largely devoid of primary production. These clades also contained elevated levels of putative microdiversity than others, which could potentially explain their high prevalence in GFSs. This hitherto unknown microdiversity may be threatened as glaciers shrink, urging towards further genomic and functional exploration of the GFS microbiome.
Identifiants
pubmed: 34522009
doi: 10.1038/s41396-021-01106-6
pii: 10.1038/s41396-021-01106-6
pmc: PMC8857233
doi:
Substances chimiques
Chlorophyll A
YF5Q9EJC8Y
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
666-675Informations de copyright
© 2021. The Author(s).
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