Chemical and Enzymatic Probing of Viral RNAs: From Infancy to Maturity and Beyond.
RNA
SHAPE
capillary electrophoresis
chemical probe
enzymatic probe
high-throughput sequencing
mutational profiling
structure
Journal
Viruses
ISSN: 1999-4915
Titre abrégé: Viruses
Pays: Switzerland
ID NLM: 101509722
Informations de publication
Date de publication:
22 09 2021
22 09 2021
Historique:
received:
27
08
2021
revised:
13
09
2021
accepted:
16
09
2021
entrez:
26
10
2021
pubmed:
27
10
2021
medline:
10
2
2022
Statut:
epublish
Résumé
RNA molecules are key players in a variety of biological events, and this is particularly true for viral RNAs. To better understand the replication of those pathogens and try to block them, special attention has been paid to the structure of their RNAs. Methods to probe RNA structures have been developed since the 1960s; even if they have evolved over the years, they are still in use today and provide useful information on the folding of RNA molecules, including viral RNAs. The aim of this review is to offer a historical perspective on the structural probing methods used to decipher RNA structures before the development of the selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE) methodology and to show how they have influenced the current probing techniques. Actually, these technological breakthroughs, which involved advanced detection methods, were made possible thanks to the development of next-generation sequencing (NGS) but also to the previous works accumulated in the field of structural RNA biology. Finally, we will also discuss how high-throughput SHAPE (hSHAPE) paved the way for the development of sophisticated RNA structural techniques.
Identifiants
pubmed: 34696322
pii: v13101894
doi: 10.3390/v13101894
pmc: PMC8537439
pii:
doi:
Substances chimiques
RNA, Viral
0
RNA
63231-63-0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Review
Langues
eng
Sous-ensembles de citation
IM
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