The UCSC Genome Browser database: 2022 update.
Journal
Nucleic acids research
ISSN: 1362-4962
Titre abrégé: Nucleic Acids Res
Pays: England
ID NLM: 0411011
Informations de publication
Date de publication:
07 01 2022
07 01 2022
Historique:
accepted:
04
10
2021
revised:
30
09
2021
received:
15
09
2021
pubmed:
1
11
2021
medline:
15
1
2022
entrez:
31
10
2021
Statut:
ppublish
Résumé
The UCSC Genome Browser, https://genome.ucsc.edu, is a graphical viewer for exploring genome annotations. The website provides integrated tools for visualizing, comparing, analyzing, and sharing both publicly available and user-generated genomic datasets. Data highlights this year include a collection of easily accessible public hub assemblies on new organisms, now featuring BLAT alignment and PCR capabilities, and new and updated clinical tracks (gnomAD, DECIPHER, CADD, REVEL). We introduced a new Track Sets feature and enhanced variant displays to aid in the interpretation of clinical data. We also added a tool to rapidly place new SARS-CoV-2 genomes in a global phylogenetic tree enabling researchers to view the context of emerging mutations in our SARS-CoV-2 Genome Browser. Other new software focuses on usability features, including more informative mouseover displays and new fonts.
Identifiants
pubmed: 34718705
pii: 6413593
doi: 10.1093/nar/gkab959
pmc: PMC8728131
doi:
Types de publication
Dataset
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
D1115-D1122Subventions
Organisme : University of California Office of the President Emergency
ID : R00RG2456
Organisme : NHGRI NIH HHS
ID : U41 HG010972
Pays : United States
Organisme : NHGRI NIH HHS
ID : U41 HG007234
Pays : United States
Organisme : NHGRI NIH HHS
ID : 5U41HG002371
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG010971
Pays : United States
Organisme : NIH HHS
ID : 5U01HG010971
Pays : United States
Organisme : NHGRI NIH HHS
ID : U41 HG002371
Pays : United States
Organisme : NHGRI NIH HHS
ID : U24 HG002371
Pays : United States
Organisme : California HIV/AIDS Research Program
ID : R01RG3764
Organisme : NHGRI NIH HHS
ID : R01 HG010329
Pays : United States
Organisme : Center for Information Technology Research in the Interest of Society
ID : 2020-0000000026
Organisme : U.S. Department of Health and Human Services
ID : 1U41HG010972
Organisme : Howard Hughes Medical Institute
ID : 090100
Pays : United States
Organisme : Silicon Valley Community Foundation
ID : 2017-171531(5022)
Organisme : California Department of Public Health
ID : 20-11088
Informations de copyright
© The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research.
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