Features and applications of haplotypes in crop breeding.


Journal

Communications biology
ISSN: 2399-3642
Titre abrégé: Commun Biol
Pays: England
ID NLM: 101719179

Informations de publication

Date de publication:
04 11 2021
Historique:
received: 21 05 2021
accepted: 09 10 2021
entrez: 5 11 2021
pubmed: 6 11 2021
medline: 18 12 2021
Statut: epublish

Résumé

Climate change with altered pest-disease dynamics and rising abiotic stresses threatens resource-constrained agricultural production systems worldwide. Genomics-assisted breeding (GAB) approaches have greatly contributed to enhancing crop breeding efficiency and delivering better varieties. Fast-growing capacity and affordability of DNA sequencing has motivated large-scale germplasm sequencing projects, thus opening exciting avenues for mining haplotypes for breeding applications. This review article highlights ways to mine haplotypes and apply them for complex trait dissection and in GAB approaches including haplotype-GWAS, haplotype-based breeding, haplotype-assisted genomic selection. Improvement strategies that efficiently deploy superior haplotypes to hasten breeding progress will be key to safeguarding global food security.

Identifiants

pubmed: 34737387
doi: 10.1038/s42003-021-02782-y
pii: 10.1038/s42003-021-02782-y
pmc: PMC8568931
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

1266

Informations de copyright

© 2021. The Author(s).

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Auteurs

Javaid Akhter Bhat (JA)

National Center for Soybean Improvement, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.

Deyue Yu (D)

National Center for Soybean Improvement, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.

Abhishek Bohra (A)

Crop Improvement Division, ICAR- Indian Institute of Pulses Research (ICAR- IIPR), Kanpur, India.

Showkat Ahmad Ganie (SA)

Department of Biotechnology, Visva-Bharati, Santiniketan, 731235, WB, India. showkatmanzoorforever@gmail.com.

Rajeev K Varshney (RK)

Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, 502324, India. rajeev.varshney@murdoch.edu.au.
State Agricultural Biotechnology Centre, Centre for Crop & Food Research Innovation, Food Futures Institute, Murdoch University, Murdoch, WA, Australia. rajeev.varshney@murdoch.edu.au.

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Classifications MeSH