Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean.
Journal
Nature microbiology
ISSN: 2058-5276
Titre abrégé: Nat Microbiol
Pays: England
ID NLM: 101674869
Informations de publication
Date de publication:
12 2021
12 2021
Historique:
received:
30
07
2020
accepted:
13
09
2021
pubmed:
17
11
2021
medline:
25
12
2021
entrez:
16
11
2021
Statut:
ppublish
Résumé
The role of the Arctic Ocean ecosystem in climate regulation may depend on the responses of marine microorganisms to environmental change. We applied genome-resolved metagenomics to 41 Arctic seawater samples, collected at various depths in different seasons during the Tara Oceans Polar Circle expedition, to evaluate the ecology, metabolic potential and activity of resident bacteria and archaea. We assembled 530 metagenome-assembled genomes (MAGs) to form the Arctic MAGs catalogue comprising 526 species. A total of 441 MAGs belonged to species that have not previously been reported and 299 genomes showed an exclusively polar distribution. Most Arctic MAGs have large genomes and the potential for fast generation times, both of which may enable adaptation to a copiotrophic lifestyle in nutrient-rich waters. We identified 38 habitat generalists and 111 specialists in the Arctic Ocean. We also found a general prevalence of 14 mixotrophs, while chemolithoautotrophs were mostly present in the mesopelagic layer during spring and autumn. We revealed 62 MAGs classified as key Arctic species, found only in the Arctic Ocean, showing the highest gene expression values and predicted to have habitat-specific traits. The Artic MAGs catalogue will inform our understanding of polar microorganisms that drive global biogeochemical cycles.
Identifiants
pubmed: 34782724
doi: 10.1038/s41564-021-00979-9
pii: 10.1038/s41564-021-00979-9
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
1561-1574Investigateurs
Marcel Babin
(M)
Peer Bork
(P)
Emmanuel Boss
(E)
Guy Cochrane
(G)
Colomban de Vargas
(C)
Gabriel Gorsky
(G)
Nigel Grimsley
(N)
Lionel Guidi
(L)
Pascal Hingamp
(P)
Daniele Iudicone
(D)
Olivier Jaillon
(O)
Stefanie Kandels
(S)
Fabrice Not
(F)
Hiroyuki Ogata
(H)
Stéphane Pesant
(S)
Nicole Poulton
(N)
Jeroen Raes
(J)
Christian Sardet
(C)
Sabrina Speich
(S)
Lars Setmmann
(L)
Matthew B Sullivan
(MB)
Informations de copyright
© 2021. The Author(s), under exclusive licence to Springer Nature Limited.
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