Actinobacteria challenge the paradigm: A unique protein architecture for a well-known, central metabolic complex.


Journal

Proceedings of the National Academy of Sciences of the United States of America
ISSN: 1091-6490
Titre abrégé: Proc Natl Acad Sci U S A
Pays: United States
ID NLM: 7505876

Informations de publication

Date de publication:
30 11 2021
Historique:
accepted: 13 10 2021
entrez: 25 11 2021
pubmed: 26 11 2021
medline: 28 12 2021
Statut: ppublish

Résumé

α-oxoacid dehydrogenase complexes are large, tripartite enzymatic machineries carrying out key reactions in central metabolism. Extremely conserved across the tree of life, they have been, so far, all considered to be structured around a high-molecular weight hollow core, consisting of up to 60 subunits of the acyltransferase component. We provide here evidence that Actinobacteria break the rule by possessing an acetyltranferase component reduced to its minimally active, trimeric unit, characterized by a unique C-terminal helix bearing an actinobacterial specific insertion that precludes larger protein oligomerization. This particular feature, together with the presence of an

Identifiants

pubmed: 34819376
pii: 2112107118
doi: 10.1073/pnas.2112107118
pmc: PMC8640841
pii:
doi:

Substances chimiques

Pyruvate Dehydrogenase Complex 0
Pyruvic Acid 8558G7RUTR
Ketoglutarate Dehydrogenase Complex EC 1.2.4.2

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Déclaration de conflit d'intérêts

The authors declare no competing interest.

Références

Biophys J. 2000 Mar;78(3):1606-19
pubmed: 10692345
Cell Host Microbe. 2011 Jan 20;9(1):21-31
pubmed: 21238944
Microb Biotechnol. 2013 Mar;6(2):87-102
pubmed: 23199277
J Struct Biol. 2010 Oct;172(1):34-44
pubmed: 20600952
Acta Crystallogr D Struct Biol. 2018 Jun 1;74(Pt 6):531-544
pubmed: 29872004
J Mol Biol. 1998 Jul 24;280(4):655-68
pubmed: 9677295
Genome Announc. 2015 Sep 10;3(5):
pubmed: 26358597
Protein Sci. 2018 Jan;27(1):293-315
pubmed: 29067766
J Mol Microbiol Biotechnol. 2009;16(3-4):236-9
pubmed: 17890844
J Biotechnol. 2006 Feb 10;121(3):291-8
pubmed: 16150509
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):235-42
pubmed: 21460441
Appl Microbiol Biotechnol. 2007 Sep;76(3):691-700
pubmed: 17437098
Proc Natl Acad Sci U S A. 2001 Dec 18;98(26):14802-7
pubmed: 11752427
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
Bioinformatics. 2014 Nov 15;30(22):3276-8
pubmed: 25095880
J Appl Crystallogr. 2017 Jun 26;50(Pt 4):1212-1225
pubmed: 28808438
Nat Methods. 2017 Mar;14(3):290-296
pubmed: 28165473
Trends Microbiol. 2011 Jul;19(7):307-14
pubmed: 21561773
J Struct Biol. 2016 Jan;193(1):1-12
pubmed: 26592709
J Synchrotron Radiat. 2015 Nov;22(6):1540-7
pubmed: 26524320
Microbiologyopen. 2020 Oct;9(10):e1113
pubmed: 32864855
Ann N Y Acad Sci. 1989;573:76-99
pubmed: 2699406
Annu Rev Biochem. 2000;69:961-1004
pubmed: 10966480
Mol Microbiol. 2013 Oct;90(2):356-66
pubmed: 23962235
J Biol Chem. 2014 May 30;289(22):15215-30
pubmed: 24742683
J Appl Crystallogr. 2017 Sep 05;50(Pt 5):1545-1553
pubmed: 29021737
Microbiology (Reading). 1996 Dec;142 ( Pt 12):3347-54
pubmed: 9004499
Sci Signal. 2009 Mar 24;2(63):ra12
pubmed: 19318624
FEBS J. 2012 Mar;279(5):713-23
pubmed: 22188654
Biochemistry. 1993 Apr 20;32(15):3887-901
pubmed: 8471601
Molecules. 2019 Dec 05;24(24):
pubmed: 31817305
Proc Natl Acad Sci U S A. 1999 Feb 16;96(4):1240-5
pubmed: 9990008
Science. 1992 Mar 20;255(5051):1544-50
pubmed: 1549782
Nucleic Acids Res. 2019 Jul 2;47(W1):W256-W259
pubmed: 30931475
mBio. 2018 Jul 31;9(4):
pubmed: 30065086
J Mol Biol. 2001 May 11;308(4):721-43
pubmed: 11350171
EMBO J. 2002 Nov 1;21(21):5587-98
pubmed: 12411477
Science. 1964 Aug 28;145(3635):930-2
pubmed: 14163814
Bioinformatics. 2020 Feb 1;36(3):765-772
pubmed: 31504163
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501
pubmed: 20383002
Subcell Biochem. 2017;83:523-550
pubmed: 28271489
Cell Host Microbe. 2008 Mar 13;3(3):137-45
pubmed: 18329613
Annu Rev Microbiol. 2016 Sep 8;70:235-54
pubmed: 27607553
Nat Methods. 2013 Jun;10(6):584-90
pubmed: 23644547
Acta Crystallogr D Struct Biol. 2017 Feb 1;73(Pt 2):148-157
pubmed: 28177311
Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):368-80
pubmed: 22505257
PLoS Pathog. 2014 Feb 20;10(2):e1003928
pubmed: 24586151
Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877
pubmed: 31588918
J Bacteriol. 2010 Oct;192(19):5203-11
pubmed: 20675489
Chem Biol. 2011 Aug 26;18(8):1011-20
pubmed: 21867916
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):125-32
pubmed: 20124692
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):293-302
pubmed: 21460447
Nucleic Acids Res. 2019 Jan 8;47(D1):D666-D677
pubmed: 30289528
PLoS Pathog. 2017 May 17;13(5):e1006399
pubmed: 28545104
EMBO J. 2006 Dec 13;25(24):5983-94
pubmed: 17124494
J Struct Biol. 2010 Jan;169(1):45-53
pubmed: 19723583
Biochem J. 2014 Nov 1;463(3):405-12
pubmed: 25088564
Chem Biol. 2010 Oct 29;17(10):1122-31
pubmed: 21035735
Mol Microbiol. 2008 Dec;70(6):1408-23
pubmed: 19019160
Nat Methods. 2017 Apr;14(4):331-332
pubmed: 28250466
Anal Biochem. 1974 Nov;62(1):286-90
pubmed: 4611273
Proc Natl Acad Sci U S A. 1971 Jun;68(6):1135-7
pubmed: 4942179
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674
pubmed: 19461840
J Biol Chem. 2014 Jun 13;289(24):16615-23
pubmed: 24798336
J Biol Chem. 2006 Feb 17;281(7):4364-70
pubmed: 16308322
Sci Rep. 2018 May 8;8(1):7204
pubmed: 29739979
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
Protein Sci. 1998 Jan;7(1):220-4
pubmed: 9514279
J Biol Chem. 2006 May 5;281(18):12300-7
pubmed: 16522631
Protein Expr Purif. 2005 May;41(1):207-34
pubmed: 15915565
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W320-4
pubmed: 24753421

Auteurs

Eduardo M Bruch (EM)

Unité de Microbiologie Structurale, Institut Pasteur, CNRS, Université de Paris, 75015 Paris, France; eduardo.bruch@sanofi.com marco.bellinzoni@pasteur.fr.

Pierre Vilela (P)

Unité de Microbiologie Structurale, Institut Pasteur, CNRS, Université de Paris, 75015 Paris, France.

Lu Yang (L)

Unité de Microbiologie Structurale, Institut Pasteur, CNRS, Université de Paris, 75015 Paris, France.
Wuhan Institute of Biological Products Co. Ltd., 430207 Wuhan, People's Republic of China.

Alexandra Boyko (A)

Unité de Microbiologie Structurale, Institut Pasteur, CNRS, Université de Paris, 75015 Paris, France.

Norik Lexa-Sapart (N)

Unité de Microbiologie Structurale, Institut Pasteur, CNRS, Université de Paris, 75015 Paris, France.

Bertrand Raynal (B)

Plateforme de Biophysique Moléculaire, Institut Pasteur, 75015 Paris, France.

Pedro M Alzari (PM)

Unité de Microbiologie Structurale, Institut Pasteur, CNRS, Université de Paris, 75015 Paris, France.

Marco Bellinzoni (M)

Unité de Microbiologie Structurale, Institut Pasteur, CNRS, Université de Paris, 75015 Paris, France; eduardo.bruch@sanofi.com marco.bellinzoni@pasteur.fr.

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