Genomic regions associated with herbicide tolerance in a worldwide faba bean (Vicia faba L.) collection.
Databases, Genetic
Genes, Plant
Genome, Plant
Genome-Wide Association Study
Genotype
Herbicide Resistance
/ genetics
Herbicides
/ pharmacology
Nicotinic Acids
/ pharmacology
Phenotype
Plant Proteins
/ genetics
Polymorphism, Single Nucleotide
Quantitative Trait Loci
Triazines
/ pharmacology
Vicia faba
/ drug effects
Journal
Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288
Informations de publication
Date de publication:
07 01 2022
07 01 2022
Historique:
received:
23
06
2021
accepted:
09
12
2021
entrez:
8
1
2022
pubmed:
9
1
2022
medline:
23
2
2022
Statut:
epublish
Résumé
Weeds represent one of the major constraints for faba bean crop. The identification of molecular markers associated with key genes imparting tolerance to herbicides can facilitate and fasten the efficient and effective development of herbicide tolerant cultivars. We phenotyped 140 faba bean genotypes in three open field experiments at two locations in Lebanon and Morocco against three herbicide treatments (T1 metribuzin 250 g ai/ha; T2 imazethapyr 75 g ai/ha; T3 untreated) and one in greenhouse where T1 and T3 were applied. The same set was genotyped using genotyping by sequencing (GBS) which yield 10,794 high quality single nucleotide polymorphisms (SNPs). ADMIXTURE software was used to infer the population structure which revealed two ancestral subpopulations. To identify SNPs associated with phenological and yield related traits under herbicide treatments, Single-trait (ST) and Multi-trait (MT) Genome Wide Association Studies (GWAS) were fitted using GEMMA software, showing 10 and 14 highly significant associations, respectively. Genomic sequences containing herbicide tolerance associated SNPs were aligned against the NCBI database using BLASTX tool using default parameters to annotate candidate genes underlying the causal variants. SNPs from acidic endochitinase, LRR receptor-like serine/threonine-protein kinase RCH1, probable serine/threonine-protein kinase NAK, malate dehydrogenase, photosystem I core protein PsaA and MYB-related protein P-like were significantly associated with herbicide tolerance traits.
Identifiants
pubmed: 34996977
doi: 10.1038/s41598-021-03861-0
pii: 10.1038/s41598-021-03861-0
pmc: PMC8741826
doi:
Substances chimiques
Herbicides
0
Nicotinic Acids
0
Plant Proteins
0
Triazines
0
imazethapyr
72T2IN94I4
metribuzin
QO836138OV
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
158Informations de copyright
© 2022. The Author(s).
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