Landscape Genomics to Enable Conservation Actions: The California Conservation Genomics Project.

Ecosystem Phylogeny Biodiversity Genomics Fresh Water California Conservation of Natural Resources
California Floristic Province climate change landscape genetics non-model organism whole-genome resequencing

Journal

The Journal of heredity
ISSN: 1465-7333
Titre abrégé: J Hered
Pays: United States
ID NLM: 0375373

Informations de publication

Date de publication:
30 11 2022
Historique:
received: 21 02 2022
accepted: 04 07 2022
pubmed: 9 4 2022
medline: 2 12 2022
entrez: 8 4 2022
Statut: ppublish

Résumé

The California Conservation Genomics Project (CCGP) is a unique, critically important step forward in the use of comprehensive landscape genetic data to modernize natural resource management at a regional scale. We describe the CCGP, including all aspects of project administration, data collection, current progress, and future challenges. The CCGP will generate, analyze, and curate a single high-quality reference genome and 100-150 resequenced genomes for each of 153 species projects (representing 235 individual species) that span the ecological and phylogenetic breadth of California's marine, freshwater, and terrestrial ecosystems. The resulting portfolio of roughly 20 000 resequenced genomes will be analyzed with identical informatic and landscape genomic pipelines, providing a comprehensive overview of hotspots of within-species genomic diversity, potential and realized corridors connecting these hotspots, regions of reduced diversity requiring genetic rescue, and the distribution of variation critical for rapid climate adaptation. After 2 years of concerted effort, full funding ($12M USD) has been secured, species identified, and funds distributed to 68 laboratories and 114 investigators drawn from all 10 University of California campuses. The remaining phases of the CCGP include completion of data collection and analyses, and delivery of the resulting genomic data and inferences to state and federal regulatory agencies to help stabilize species declines. The aspirational goals of the CCGP are to identify geographic regions that are critical to long-term preservation of California biodiversity, prioritize those regions based on defensible genomic criteria, and provide foundational knowledge that informs management strategies at both the individual species and ecosystem levels.

Identifiants

DOI: 10.1093/jhered/esac020 PMID: 35395669
pubmed: 35395669
pii: 6565646
doi: 10.1093/jhered/esac020
doi:

Types de publication

Review Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

577-588

Informations de copyright

© The Author(s) 2022. Published by Oxford University Press on behalf of The American Genetic Association. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Auteurs

H Bradley Shaffer (HB)

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA.
La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California, Los Angeles, CA 90095, USA.
California Department of Fish and Wildlife, Fisheries Branch, West Sacramento, CA 95605, USA.
ORCID: 0000-0002-5795-9242

Erin Toffelmier (E)

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA.
La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California, Los Angeles, CA 90095, USA.

Russ B Corbett-Detig (RB)

Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.

Merly Escalona (M)

Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.

Bjorn Erickson (B)

U.S. Fish and Wildlife Service, Sacramento, CA 95825, USA.

Peggy Fiedler (P)

Natural Reserve System, Office of the President, University of California, Oakland, CA 94607, USA.

Mark Gold (M)

California Natural Resources Agency, 1416 Ninth Street, Suite 1311, Sacramento, CA 95814, USA.

Ryan J Harrigan (RJ)

La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California, Los Angeles, CA 90095, USA.
Center for Tropical Research, Institute for Environment and Sustainability, University of California, Los Angeles, CA 90095, USA.

Scott Hodges (S)

Department of Ecology, Evolution and Marine Biology, University of California, Santa Barbara, CA 93106, USA.

Tara K Luckau (TK)

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA.
La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California, Los Angeles, CA 90095, USA.

Courtney Miller (C)

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA.
La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California, Los Angeles, CA 90095, USA.

Daniel R Oliveira (DR)

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA.
La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California, Los Angeles, CA 90095, USA.
ORCID: 0000-0002-3458-2833

Kevin E Shaffer (KE)

California Department of Fish and Wildlife, Fisheries Branch, West Sacramento, CA 95605, USA.

Beth Shapiro (B)

Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.
Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.

Victoria L Sork (VL)

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA.
La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California, Los Angeles, CA 90095, USA.

Ian J Wang (IJ)

Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA 94720, USA.
Museum of Vertebrate Zoology, University of California, Berkeley, CA 94720, USA.

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Classifications MeSH

questionsmedicales.fr › Environnement et santé publique › Environnement › Écosystème › Landscape Genomics to Enable Conservation...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Landscape Genomics to Enable Conservation...
questionsmedicales.fr › Environnement et santé publique › Environnement › Écosystème › Biodiversité › Landscape Genomics to Enable Conservation...
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Génétique › Génomique › Landscape Genomics to Enable Conservation...
questionsmedicales.fr › Environnement et santé publique › Environnement › Eau douce › Landscape Genomics to Enable Conservation...
questionsmedicales.fr › Régions géographiques › Amériques › Amérique du Nord › États-Unis › États du Sud-Ouest des États-Unis › Californie › Landscape Genomics to Enable Conservation...
questionsmedicales.fr › Environnement et santé publique › Environnement › Conservation des ressources naturelles › Landscape Genomics to Enable Conservation...