Mechanisms of Action of Non-Canonical ECF Sigma Factors.
ECF sigma factor
stress response
transcriptional regulation
Journal
International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791
Informations de publication
Date de publication:
25 Mar 2022
25 Mar 2022
Historique:
received:
07
03
2022
revised:
23
03
2022
accepted:
24
03
2022
entrez:
12
4
2022
pubmed:
13
4
2022
medline:
14
4
2022
Statut:
epublish
Résumé
Extracytoplasmic function (ECF) sigma factors are subunits of the RNA polymerase specialized in activating the transcription of a subset of genes responding to a specific environmental condition. The signal-transduction pathways where they participate can be activated by diverse mechanisms. The most common mechanism involves the action of a membrane-bound anti-sigma factor, which sequesters the ECF sigma factor, and releases it after the stimulus is sensed. However, despite most of these systems following this canonical regulation, there are many ECF sigma factors exhibiting a non-canonical regulatory mechanism. In this review, we aim to provide an updated and comprehensive view of the different activation mechanisms known for non-canonical ECF sigma factors, detailing their inclusion to the different phylogenetic groups and describing the mechanisms of regulation of some of their representative members such as EcfG from
Identifiants
pubmed: 35408957
pii: ijms23073601
doi: 10.3390/ijms23073601
pmc: PMC8999054
pii:
doi:
Substances chimiques
Bacterial Proteins
0
Sigma Factor
0
DNA-Directed RNA Polymerases
EC 2.7.7.6
Types de publication
Journal Article
Review
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : Spanish Government and FEDER funds
ID : PID2020-112634GB-I00 and A-BIO-126-UGR20
Références
J Bacteriol. 2006 Mar;188(5):1935-42
pubmed: 16484205
Curr Genet. 2016 Aug;62(3):487-98
pubmed: 26852121
mSphere. 2020 Apr 8;5(2):
pubmed: 32269155
Appl Microbiol Biotechnol. 2009 Jan;81(6):1149-60
pubmed: 18949475
Genes Dev. 1999 Nov 15;13(22):3015-26
pubmed: 10580008
FEBS J. 2010 Feb;277(3):605-26
pubmed: 19951358
Appl Environ Microbiol. 2014 Aug;80(16):4911-9
pubmed: 24907323
Nat Commun. 2016 Jul 19;7:12194
pubmed: 27432510
Sci Rep. 2019 Mar 14;9(1):4513
pubmed: 30872756
Transcription. 2012 Mar-Apr;3(2):63-7
pubmed: 22414752
mBio. 2017 Jan 24;8(1):
pubmed: 28119474
Trends Microbiol. 2015 Mar;23(3):164-71
pubmed: 25582885
Biochim Biophys Acta Gene Regul Mech. 2019 Jul;1862(7):706-721
pubmed: 29729420
Comput Struct Biotechnol J. 2020 Nov 09;18:3415-3424
pubmed: 33294136
PLoS One. 2013 Nov 18;8(11):e80407
pubmed: 24260387
Free Radic Biol Med. 2012 Oct 15;53(8):1625-41
pubmed: 22921590
J Mol Biol. 2010 Jan 29;395(4):686-704
pubmed: 19895816
Nucleic Acids Res. 2016 Jul 8;44(12):5571-84
pubmed: 26951374
Mol Microbiol. 2019 Aug;112(2):356-373
pubmed: 31206859
Adv Microb Physiol. 2002;46:47-110
pubmed: 12073657
Curr Opin Microbiol. 2013 Apr;16(2):148-55
pubmed: 23466210
Methods Mol Biol. 2016;1440:125-37
pubmed: 27311669
Nucleic Acids Res. 2017 Sep 19;45(16):9760-9772
pubmed: 28934483
J Bacteriol. 2015 Aug 1;197(15):2517-35
pubmed: 25986905
Int J Mol Sci. 2021 Feb 20;22(4):
pubmed: 33672733
Chem Sci. 2019 Feb 21;10(12):3608-3615
pubmed: 30996953
mBio. 2013 Jan 08;4(1):e00541-12
pubmed: 23300250
Front Microbiol. 2017 May 02;8:747
pubmed: 28512454
Appl Environ Microbiol. 2019 Oct 30;85(22):
pubmed: 31492668
Mol Microbiol. 2019 Aug;112(2):385-398
pubmed: 31187912
Mol Microbiol. 2010 Feb;75(3):592-606
pubmed: 20025669
Mol Microbiol. 2019 Aug;112(2):374-384
pubmed: 31111523
Mol Microbiol. 2002 Jul;45(2):365-74
pubmed: 12123450
Mol Microbiol. 2019 Aug;112(2):399-409
pubmed: 31175685
Mol Microbiol. 2003 Nov;50(3):949-59
pubmed: 14617153
Front Microbiol. 2020 Oct 21;11:579495
pubmed: 33193206
Metallomics. 2018 Jul 18;10(7):876-886
pubmed: 29961779
J Biol Chem. 2007 Feb 16;282(7):4711-4718
pubmed: 17145760
Microbiology (Reading). 2008 Mar;154(Pt 3):915-923
pubmed: 18310037
PeerJ. 2014 Feb 06;2:e253
pubmed: 24688837
Nat Commun. 2012 Mar 20;3:753
pubmed: 22434196
J Mol Model. 2020 Mar 16;26(4):77
pubmed: 32180013
Proc Natl Acad Sci U S A. 1997 May 13;94(10):4907-12
pubmed: 9144163
Microbiologyopen. 2012 Jun;1(2):194-213
pubmed: 22950025
J Bacteriol. 2020 Jun 8;:
pubmed: 32513682
Mol Microbiol. 2009 Nov;74(3):557-81
pubmed: 19737356
Environ Microbiol. 2018 Apr;20(4):1562-1575
pubmed: 29488354
J Bacteriol. 2018 Oct 10;200(21):
pubmed: 30126941
Front Microbiol. 2018 Feb 21;9:312
pubmed: 29515563
Mol Microbiol. 2018 Jan;107(2):164-179
pubmed: 29052909
PLoS One. 2011;6(12):e29002
pubmed: 22194974
Mol Cell. 2007 Sep 7;27(5):793-805
pubmed: 17803943
Nat Microbiol. 2020 Mar;5(3):395-406
pubmed: 31988380
Mol Oral Microbiol. 2012 Jun;27(3):202-19
pubmed: 22520389
Nucleic Acids Res. 2021 Jan 25;49(2):986-1005
pubmed: 33398323
PLoS Genet. 2011 Jun;7(6):e1002106
pubmed: 21655090
Environ Microbiol. 2019 Dec;21(12):4465-4477
pubmed: 31408268
J Proteome Res. 2011 Dec 2;10(12):5481-92
pubmed: 21999169
Mol Microbiol. 2019 Aug;112(2):498-514
pubmed: 30990934
J Bacteriol. 2006 Oct;188(20):7222-9
pubmed: 17015661