A fit-less approach to the elasticity of the handles in optical tweezers experiments.

Data analysis Optical tweezers

Journal

European biophysics journal : EBJ
ISSN: 1432-1017
Titre abrégé: Eur Biophys J
Pays: Germany
ID NLM: 8409413

Informations de publication

Date de publication:
Jul 2022
Historique:
received: 22 02 2022
accepted: 02 05 2022
revised: 01 05 2022
pubmed: 23 5 2022
medline: 29 6 2022
entrez: 22 5 2022
Statut: ppublish

Résumé

The elastic properties of the double-stranded DNA handles used in optical tweezers experiments on biomolecules are customarily modeled by an extensible worm-like chain model. Fitting such a model to experimental data, however, is no trivial task, as the function depends on four parameters in a highly non-linear fashion. We hereby propose a method to bypass the fitting procedure and obtain an empirical force vs. extension curve that accurately reproduces the elasticity of the handles.

Identifiants

pubmed: 35599262
doi: 10.1007/s00249-022-01603-2
pii: 10.1007/s00249-022-01603-2
doi:

Substances chimiques

DNA 9007-49-2

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

413-418

Subventions

Organisme : Università Degli Studi di Modena e Reggio Emila
ID : 020145_17_FDA_CARRAFAR2016INTER

Informations de copyright

© 2022. European Biophysical Societies' Association.

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Auteurs

Alessandro Mossa (A)

INFN Firenze, via Sansone 1, 50019, Sesto Fiorentino, Italy. alessandro.mossa@fi.infn.it.
ISIS "Leonardo da Vinci", via del Terzolle 91, 50127, Florence, Italy. alessandro.mossa@fi.infn.it.

Ciro Cecconi (C)

Department of Physics, Informatics and Mathematics, University of Modena and Reggio Emilia, via Giuseppe Campi 213/a, 41125, Modena, Italy. ciro.cecconi@gmail.com.
Center S3, CNR Institute Nanoscience, via Giuseppe Campi 213/a, 41125, Modena, Italy. ciro.cecconi@gmail.com.

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