Various Approaches to Studying the Phase Transition in an Octamethylcyclotetrasiloxane Crystal: From X-ray Structural Analysis to Metadynamics.

Born–Oppenheimer molecular dynamics X-ray structure determination free energy of phase transition in situ cryo-crystallization metadynamics periodic DFT calculations phase transition path quantum chemical calculations

Journal

International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791

Informations de publication

Date de publication:
13 Aug 2022
Historique:
received: 01 07 2022
revised: 05 08 2022
accepted: 10 08 2022
entrez: 26 8 2022
pubmed: 27 8 2022
medline: 30 8 2022
Statut: epublish

Résumé

The structure, thermodynamic parameters, and the character of thermal motion in octamethylcyclotetrasiloxane (D4) were investigated using the combination of experimental (single-crystal X-ray diffraction, thermochemistry) and theoretical (density functional theory calculations, ab initio molecular dynamics and metadynamics) methods. Single crystals of D4 were grown in a glass capillary in situ and the structures of high- (238-270 K) and low-temperature (100-230 K) phases were studied in detail. In the temperature interval 230-238 K, a phase transition with rather low enthalpy (-1.04(7) kcal/mol) was detected. It was found that phase transition is accompanied by change of conformation of cyclosiloxane moiety from boat-saddle (cradle) to chair. According to PBE0/6-311G(d,p) calculation of isolated D4, such conformation changes are characterized by a low barrier (0.07 kcal/mol). The character of molecular thermal motion and the path of phase transition were established with combination of periodic DFT calculations, including molecular dynamics and metadynamics. The effect of crystal field led to an increase in the calculated phase transition barrier (4.27 kcal/mol from low- to high-temperature phase and 3.20 kcal/mol in opposite direction).

Identifiants

pubmed: 36012340
pii: ijms23169073
doi: 10.3390/ijms23169073
pmc: PMC9408834
pii:
doi:

Substances chimiques

Siloxanes 0
octamethylcyclotetrasiloxane CZ227117JE

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Russian Foundation for Basic Research
ID : 19-33-90196

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Auteurs

Alexander D Volodin (AD)

A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Science, Vavilova Street 28, 119991 Moscow, Russia.
Highest Chemical College of RAS, D. Mendeleev University of Chemical Technology of Russia, Miusskaya Square 9, 125047 Moscow, Russia.

Alexander F Smol'yakov (AF)

A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Science, Vavilova Street 28, 119991 Moscow, Russia.
Basic Department of Chemistry of Innovative Materials and Technologies, Plekhanov Russian University of Economics, Stremyannyy Pereulok 36, 117997 Moscow, Russia.

Alexander A Korlyukov (AA)

A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Science, Vavilova Street 28, 119991 Moscow, Russia.
Highest Chemical College of RAS, D. Mendeleev University of Chemical Technology of Russia, Miusskaya Square 9, 125047 Moscow, Russia.

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Classifications MeSH