Shared properties of gene transfer agent and core genes revealed by comparative genomics of Alphaproteobacteria.
GC skew
codon usage
genome plasticity
inversion
methylation
repetitive elements
Journal
Microbial genomics
ISSN: 2057-5858
Titre abrégé: Microb Genom
Pays: England
ID NLM: 101671820
Informations de publication
Date de publication:
11 2022
11 2022
Historique:
entrez:
9
11
2022
pubmed:
10
11
2022
medline:
15
11
2022
Statut:
ppublish
Résumé
Gene transfer agents (GTAs) are phage-like particles that transfer pieces of cellular genomic DNA to other cells. Homologues of the
Identifiants
pubmed: 36350115
doi: 10.1099/mgen.0.000890
pmc: PMC9836097
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Références
mBio. 2020 Jul 14;11(4):
pubmed: 32665274
BMC Genomics. 2015 Sep 03;16:667
pubmed: 26336060
Nucleic Acids Res. 2015 Nov 16;43(20):9729-41
pubmed: 26253743
Genome Biol Evol. 2018 Nov 1;10(11):3110-3117
pubmed: 30371772
Appl Environ Microbiol. 2013 Mar;79(5):1712-7
pubmed: 23315739
Virus Evol. 2017 Dec 07;3(2):vex036
pubmed: 29250433
Appl Environ Microbiol. 2008 May;74(10):2933-9
pubmed: 18359833
Genome Res. 2004 Jul;14(7):1394-403
pubmed: 15231754
Biochem Biophys Rep. 2015 Nov 04;4:369-374
pubmed: 29124226
PLoS Genet. 2013 May;9(5):e1003541
pubmed: 23737758
Genome Biol. 2012 Aug 31;13(8):R77
pubmed: 22937822
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549
pubmed: 29722887
BMC Bioinformatics. 2011 Apr 28;12:124
pubmed: 21526987
Nat Rev Microbiol. 2012 Jun 11;10(7):472-82
pubmed: 22683880
Curr Opin Microbiol. 2017 Aug;38:122-129
pubmed: 28599143
Genes Dev. 2015 Nov 1;29(21):2272-86
pubmed: 26545812
Crit Rev Microbiol. 2017 Nov;43(6):709-730
pubmed: 28407717
Curr Genomics. 2012 Mar;13(1):65-73
pubmed: 22942676
Nat Rev Microbiol. 2013 Oct;11(10):675-87
pubmed: 23979432
Curr Opin Microbiol. 2004 Oct;7(5):519-27
pubmed: 15451508
Annu Rev Virol. 2017 Sep 29;4(1):87-104
pubmed: 28784044
BMC Bioinformatics. 2007 Jun 26;8:221
pubmed: 17594472
BMC Syst Biol. 2010 Apr 28;4:52
pubmed: 20426835
Nat Commun. 2018 Nov 7;9(1):4662
pubmed: 30405125
Microbiology (Reading). 2004 Jun;150(Pt 6):1609-1627
pubmed: 15184548
Genome Res. 2013 Oct;23(10):1590-600
pubmed: 23868195
Mol Microbiol. 2020 Jul;114(1):127-139
pubmed: 32187735
Genome Biol Evol. 2018 Jan 1;10(1):359-369
pubmed: 29325123
Mol Biol Evol. 2019 Jul 1;36(7):1473-1480
pubmed: 30968125
Microbiology (Reading). 2017 Sep;163(9):1355-1363
pubmed: 28869409
Front Microbiol. 2018 Oct 25;9:2527
pubmed: 30410473
Mol Microbiol. 2012 Jul;85(2):314-25
pubmed: 22640804
Proc Natl Acad Sci U S A. 2016 Feb 23;113(8):2176-81
pubmed: 26839411
Bioinformatics. 2007 Jan 1;23(1):119-21
pubmed: 17038345
Mol Biol Evol. 1996 May;13(5):660-5
pubmed: 8676740
Nucleic Acids Res. 2016 Jul 8;44(W1):W16-21
pubmed: 27141966
Proc Natl Acad Sci U S A. 2000 Jan 18;97(2):859-64
pubmed: 10639170
Nature. 1980 Oct 9;287(5782):560-1
pubmed: 6999365
Elife. 2017 Jan 16;6:
pubmed: 28092263
Trends Microbiol. 2007 Feb;15(2):54-62
pubmed: 17184993
BMC Genomics. 2008 Nov 28;9:570
pubmed: 19038058
Nucleic Acids Res. 2003 Nov 15;31(22):6570-7
pubmed: 14602916
Genetics. 2003 Aug;164(4):1279-89
pubmed: 12930739
Nucleic Acids Res. 2010 Oct;38(18):6089-101
pubmed: 20478826
Cell Syst. 2017 Jun 28;4(6):611-621.e6
pubmed: 28624614
Nucleic Acids Res. 2002 May 1;30(9):2031-42
pubmed: 11972343
Int J Mol Sci. 2015 Sep 23;16(9):23111-26
pubmed: 26404268
PLoS One. 2012;7(8):e43772
pubmed: 22916305
Front Microbiol. 2019 Apr 12;10:803
pubmed: 31031742
BMC Bioinformatics. 2008 Feb 01;9:79
pubmed: 18237442
PLoS Comput Biol. 2020 Dec 4;16(12):e1008439
pubmed: 33275607
Nat Commun. 2022 May 12;13(1):2628
pubmed: 35552380
Genome Res. 2002 Jul;12(7):1080-90
pubmed: 12097345
Front Microbiol. 2021 Apr 29;12:662907
pubmed: 33995326
Mol Biol Evol. 2013 Apr;30(4):737-51
pubmed: 23243039
Hum Mol Genet. 2006 Apr 15;15 Spec No 1:R51-6
pubmed: 16651369