The Gossypium herbaceum L. Wagad genome as a resource for understanding cotton domestication.
Gossypium herbaceum
Wagad
cotton
genome sequence
Journal
G3 (Bethesda, Md.)
ISSN: 2160-1836
Titre abrégé: G3 (Bethesda)
Pays: England
ID NLM: 101566598
Informations de publication
Date de publication:
09 02 2023
09 02 2023
Historique:
received:
03
06
2022
accepted:
23
10
2022
pubmed:
2
12
2022
medline:
14
2
2023
entrez:
1
12
2022
Statut:
ppublish
Résumé
Gossypium herbaceum is a species of cotton native to Africa and Asia that is one of the 2 domesticated diploids. Together with its sister-species G. arboreum, these A-genome taxa represent models of the extinct A-genome donor of modern polyploid cotton, which provide about 95% of cotton grown worldwide. As part of a larger effort to characterize variation and improve resources among diverse diploid and polyploid cotton genomes, we sequenced and assembled the genome of G. herbaceum cultivar (cv.) Wagad, representing the first domesticated accession for this species. This chromosome-level genome was generated using a combination of PacBio long-read technology, HiC, and Bionano optical mapping and compared to existing genome sequences in cotton. We compare the genome of this cultivar to the existing genome of wild G. herbaceum subspecies africanum to elucidate changes in the G. herbaceum genome concomitant with domestication and extend these analyses to gene expression using available RNA-seq. Our results demonstrate the utility of the G. herbaceum cv. Wagad genome in understanding domestication in the diploid species, which could inform modern breeding programs.
Identifiants
pubmed: 36454094
pii: 6858943
doi: 10.1093/g3journal/jkac308
pmc: PMC9911056
pii:
doi:
Types de publication
Journal Article
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Informations de copyright
Published by Oxford University Press on behalf of the Genetics Society of America 2022.
Déclaration de conflit d'intérêts
Conflicts of interest The authors declare no conflict of interest.
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