Form and function of archaeal genomes.
CID
SMC
TAD
archaea
cohesin
condensin
Journal
Biochemical Society transactions
ISSN: 1470-8752
Titre abrégé: Biochem Soc Trans
Pays: England
ID NLM: 7506897
Informations de publication
Date de publication:
16 12 2022
16 12 2022
Historique:
received:
19
10
2022
revised:
30
11
2022
accepted:
01
12
2022
pubmed:
14
12
2022
medline:
21
12
2022
entrez:
13
12
2022
Statut:
ppublish
Résumé
A key maxim in modernist architecture is that 'form follows function'. While modernist buildings are hopefully the product of intelligent design, the architectures of chromosomes have been sculpted by the forces of evolution over many thousands of generations. In the following, I will describe recent advances in our understanding of chromosome architecture in the archaeal domain of life. Although much remains to be learned about the mechanistic details of archaeal chromosome organization, some general principles have emerged. At the 10-100 kb level, archaeal chromosomes have a conserved local organization reminiscent of bacterial genomes. In contrast, lineage-specific innovations appear to have imposed distinct large-scale architectural features. The ultimate functions of genomes are to store and to express genetic information. Gene expression profiles have been shown to influence chromosome architecture, thus their form follows function. However, local changes to chromosome conformation can also influence gene expression and therefore, in these instances, function follows form.
Identifiants
pubmed: 36511238
pii: 232268
doi: 10.1042/BST20221396
pmc: PMC9764264
mid: NIHMS1854850
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
1931-1939Subventions
Organisme : NIGMS NIH HHS
ID : R01 GM125579
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM135178
Pays : United States
Informations de copyright
© 2022 The Author(s).
Références
J Bacteriol. 1997 Aug;179(16):4963-9
pubmed: 9260934
Science. 2008 Dec 12;322(5908):1710-3
pubmed: 19008417
Mol Biol Evol. 2018 Aug 1;35(8):1855-1868
pubmed: 29668953
J Mol Biol. 2021 Mar 19;433(6):166791
pubmed: 33383035
PLoS One. 2014 Apr 14;9(4):e94819
pubmed: 24733558
EMBO J. 2017 Dec 15;36(24):3573-3599
pubmed: 29217591
Nat Microbiol. 2022 Jun;7(6):820-830
pubmed: 35618771
EMBO J. 2007 Feb 7;26(3):816-24
pubmed: 17255945
Mol Microbiol. 2004 Jun;52(6):1567-77
pubmed: 15186409
Nat Struct Mol Biol. 2013 Mar;20(3):371-9
pubmed: 23353789
Proc Natl Acad Sci U S A. 2008 Oct 28;105(43):16737-42
pubmed: 18922777
Front Microbiol. 2021 May 25;12:661411
pubmed: 34113328
J Cell Sci. 2020 May 18;133(10):
pubmed: 32423947
Cell. 2019 Sep 19;179(1):165-179.e18
pubmed: 31539494
Cell Rep. 2013 Feb 21;3(2):485-96
pubmed: 23375370
Nature. 2012 Aug 23;488(7412):504-7
pubmed: 22820252
Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3754-9
pubmed: 22355141
Science. 2017 Feb 3;355(6324):524-527
pubmed: 28154080
Science. 2009 Oct 9;326(5950):289-93
pubmed: 19815776
Nature. 2022 Feb;602(7895):101-105
pubmed: 35022609
Science. 2017 Aug 11;357(6351):
pubmed: 28798101
Cell. 2017 Oct 5;171(2):305-320.e24
pubmed: 28985562
Mol Biol Evol. 2007 Apr;24(4):893-5
pubmed: 17237472
Science. 2013 Nov 8;342(6159):731-4
pubmed: 24158908
mBio. 2019 Aug 27;10(4):
pubmed: 31455649
Cell. 2016 Feb 25;164(5):847-57
pubmed: 26919425
IUCrJ. 2020 Jan 16;7(Pt 2):193-206
pubmed: 32148848
Mol Microbiol. 2007 Jan;63(2):521-9
pubmed: 17163966
Front Microbiol. 2017 Oct 27;8:2084
pubmed: 29163389
Mol Cell. 2021 Feb 4;81(3):459-472.e10
pubmed: 33382984
Nat Microbiol. 2022 Feb;7(2):186-188
pubmed: 34949829
Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):E6456-65
pubmed: 26499245
Biochem Soc Trans. 2011 Jan;39(1):150-4
pubmed: 21265763
Nature. 2013 Nov 28;503(7477):544-547
pubmed: 24185008
Front Microbiol. 2022 Aug 05;13:913088
pubmed: 35992648
Proc Natl Acad Sci U S A. 2008 Dec 2;105(48):18942-6
pubmed: 18987308
Curr Opin Microbiol. 2014 Dec;22:15-21
pubmed: 25305533
Cell. 2017 May 18;169(5):930-944.e22
pubmed: 28525758
Annu Rev Genet. 2001;35:673-745
pubmed: 11700297
Microbiology (Reading). 2004 Jun;150(Pt 6):1609-1627
pubmed: 15184548
Cold Spring Harb Symp Quant Biol. 2017;82:45-55
pubmed: 29728444
Mol Cell. 2021 Feb 4;81(3):473-487.e6
pubmed: 33382983
Genome Biol Evol. 2014 Jan;6(1):170-8
pubmed: 24391154
Genome Biol Evol. 2021 Dec 1;13(12):
pubmed: 34894224
Proc Natl Acad Sci U S A. 1977 Nov;74(11):5088-90
pubmed: 270744
Annu Rev Cell Dev Biol. 2015;31:171-99
pubmed: 26566111
Nature. 2002 Aug 1;418(6897):562-6
pubmed: 12152085
Mol Microbiol. 2002 Oct;46(2):395-409
pubmed: 12406217
Mol Cell. 2017 Jul 20;67(2):334-347.e5
pubmed: 28689660
EMBO J. 2016 Jul 15;35(14):1582-95
pubmed: 27288403