Detection of DNA replication errors and 8-oxo-dGTP-mediated mutations in E. coli by Duplex DNA Sequencing.
8-oxo-guanine
DNA mismatch repair
Duplex sequencing
E. coli
Mutations
Journal
DNA repair
ISSN: 1568-7856
Titre abrégé: DNA Repair (Amst)
Pays: Netherlands
ID NLM: 101139138
Informations de publication
Date de publication:
03 2023
03 2023
Historique:
received:
27
10
2022
revised:
12
01
2023
accepted:
26
01
2023
pmc-release:
01
03
2024
pubmed:
5
2
2023
medline:
3
3
2023
entrez:
4
2
2023
Statut:
ppublish
Résumé
Mutation is a phenomenon inescapable for all life-forms, including bacteria. While bacterial mutation rates are generally low due to the operation of error-avoidance systems, sometimes they are elevated by many orders of magnitude. Such a state, known as a hypermutable state, can result from exposure to stress or to harmful environments. Studies of bacterial mutation frequencies and analysis of the precise types of mutations can provide insights into the mechanisms by which mutations occur and the possible involvement of error-avoidance pathways. Several approaches have been used for this, like reporter assays involving non-essential genes or mutation accumulation over multiple generations. However, these approaches give an indirect estimation, and a more direct approach for determining mutations is desirable. With the recent development of a DNA sequencing technique known as Duplex Sequencing, it is possible to detect rare variants in a population at a frequency of 1 in 10
Identifiants
pubmed: 36738688
pii: S1568-7864(23)00016-2
doi: 10.1016/j.dnarep.2023.103462
pmc: PMC9992157
mid: NIHMS1871700
pii:
doi:
Substances chimiques
8-oxodeoxyguanosine triphosphate
139307-94-1
DNA, Bacterial
0
mutT protein, E coli
EC 3.6.1.-
Pyrophosphatases
EC 3.6.1.-
Escherichia coli Proteins
0
Types de publication
Journal Article
Research Support, N.I.H., Intramural
Langues
eng
Sous-ensembles de citation
IM
Pagination
103462Subventions
Organisme : Intramural NIH HHS
ID : Z01 ES101905
Pays : United States
Informations de copyright
Published by Elsevier B.V.
Déclaration de conflit d'intérêts
Conflict of interest The authors declare that there are no conflicts of interest.
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