Genome and haplotype provide insights into the population differentiation and breeding improvement of Gossypium barbadense.

Gossypium / genetics Haplotypes Plant Breeding Phenotype Genome, Plant / genetics
Gossypium barbadense Haplotype Perennial accession Population structure Selection and domestication Structural variation

Journal

Journal of advanced research
ISSN: 2090-1224
Titre abrégé: J Adv Res
Pays: Egypt
ID NLM: 101546952

Informations de publication

Date de publication:
12 2023
Historique:
received: 07 11 2022
revised: 10 01 2023
accepted: 04 02 2023
medline: 4 12 2023
pubmed: 13 2 2023
entrez: 12 2 2023
Statut: ppublish

Résumé

Sea-island cotton (Gossypium barbadense, Gb) is one of the major sources of high-grade natural fiber. Besides the common annual Gb cotton, perennial Gb cotton is also cultivated, but studies on perennial Gb cotton are rare. We aimed to make a systematic analysis of perennial sea-island cotton and lay a foundation for its utilization in breeding, and try to identify the representative structural variations (SVs) in sea-island cotton, and to reveal the population differentiation and adaptive improvement of sea-island cotton. Through genome assembly of one perennial Gb cotton accession (named Gb_M210936) and comparative genome analysis, variations during Gb cotton domestication were identified by comparing Gb_M210936 with annual Gb accession 3-79 and with wild allotetraploid cotton G. darwinii. Six perennial Gb accessions combining with the resequenced 1,129 cotton accessions were used to conduct population and genetic analysis. Large haplotype blocks (haploblocks), generated from interspecific introgressions and intraspecific inversions, were identified and were used to analyze their effects on population differentiation and agronomic traits of sea-island cotton. One reference genome of perennial sea-island cotton was assembled. Representative SVs in sea-island cotton were identified, and 31 SVs were found to be associated with agronomic traits. Perennial Gb cotton had a closer kinship with the wild-to-landrace continuum Gb cotton from south America where Gb cotton is originally domesticated. Haploblocks were associated with agronomic traits improvement of sea-island cotton, promoted sea-island cotton differentiation into three subgroups, were suffered from breeding selection, and may drive Gb cotton to be adapted to central Asian. Our study made up the lack of perennial Gb cotton genome, and clarified that exotic introgressions improved the traits of sea-island cotton, promoted the population differentiation, and drove sea-island cotton adaptive to central Asia, which will provide new insights for the genetic breeding improvement of sea-island cottons.

Identifiants

DOI: 10.1016/j.jare.2023.02.002 PMID: 36775017 PMC: PMC10703724
pubmed: 36775017
pii: S2090-1232(23)00037-1
doi: 10.1016/j.jare.2023.02.002
pmc: PMC10703724
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

15-27

Informations de copyright

Copyright © 2023. Production and hosting by Elsevier B.V.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

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Auteurs

Nian Wang (N)

National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China. Electronic address: wangnian@webmail.hzau.edu.cn.

Yuanxue Li (Y)

National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China. Electronic address: liyx1124@163.com.

Qingying Meng (Q)

National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China. Electronic address: qymeng1996@foxmail.com.

Meilin Chen (M)

National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China. Electronic address: 1204514079@qq.com.

Mi Wu (M)

National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China. Electronic address: wumi@webmail.hzau.edu.cn.

Ruiting Zhang (R)

National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China. Electronic address: 934520453@qq.com.

Zhiyong Xu (Z)

National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China. Electronic address: 17097462507@163.com.

Jie Sun (J)

Key Laboratory of Oasis Ecology Agricultural of Xinjiang Bingtuan, College of Agriculture, Shihezi University, Shihezi 832000, Xinjiang, China. Electronic address: sunjie@shzu.edu.cn.

Xianlong Zhang (X)

National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China. Electronic address: xlzhang@mail.hzau.edu.cn.

Xinhui Nie (X)

Key Laboratory of Oasis Ecology Agricultural of Xinjiang Bingtuan, College of Agriculture, Shihezi University, Shihezi 832000, Xinjiang, China. Electronic address: xjnxh2004130@126.com.

Daojun Yuan (D)

National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China. Electronic address: robert@mail.hzau.edu.cn.

Zhongxu Lin (Z)

National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China; Hubei Hongshan Laboratory, Wuhan 430070, China; Key Laboratory of Oasis Ecology Agricultural of Xinjiang Bingtuan, College of Agriculture, Shihezi University, Shihezi 832000, Xinjiang, China. Electronic address: linzhongxu@mail.hzau.edu.cn.

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Rosanae › Malvales › Malvaceae › Gossypium › Genome and haplotype provide insights into the...
questionsmedicales.fr › Phénomènes génétiques › Génotype › Haplotypes › Genome and haplotype provide insights into the...
questionsmedicales.fr › Technologie, industrie et agriculture › Agriculture › Production végétale › Amélioration des plantes › Genome and haplotype provide insights into the...
questionsmedicales.fr › Phénomènes génétiques › Phénotype › Genome and haplotype provide insights into the...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome végétal › Genome and haplotype provide insights into the...