Genomic insights into a Pseudomonas amygdali isolate from Hibiscus rosa-sinensis.

Hibiscus Rosa Copper Genomics Pseudomonas
Comparative genomics Identification Leaf spots Pseudomonas amygdali Type III secretion hibiscus

Journal

Genomics
ISSN: 1089-8646
Titre abrégé: Genomics
Pays: United States
ID NLM: 8800135

Informations de publication

Date de publication:
05 2023
Historique:
received: 23 09 2022
revised: 31 01 2023
accepted: 02 03 2023
medline: 25 5 2023
pubmed: 9 3 2023
entrez: 8 3 2023
Statut: ppublish

Résumé

The taxonomy of Pseudomonas has been extensively studied, yet the determination of species is currently difficult because of recent taxonomic changes and the lack of complete genomic sequence data. We isolated a bacterium causing a leaf spot disease on hibiscus (Hibiscus rosa-sinensis). Whole genome sequencing revealed similarity to Pseudomonas amygdali pv. tabaci and pv. lachrymans. The genome of this isolate (referred to as P. amygdali 35-1) shared 4987 genes with P. amygdali pv. hibisci, but possessed 204 unique genes and contained gene clusters encoding putative secondary metabolites and copper resistance determinants. We predicted this isolate's type III secretion effector (T3SE) repertoire and identified 64 putative T3SEs, some of which are present in other P. amygdali pv. hibisci strains. Assays showed that the isolate was resistant to copper at a concentration of 1.6 mM. This study provides an improved understanding of the genomic relatedness and diversity of the P. amygdali species.

Identifiants

DOI: 10.1016/j.ygeno.2023.110600 PMID: 36889367
pubmed: 36889367
pii: S0888-7543(23)00044-7
doi: 10.1016/j.ygeno.2023.110600
pii:
doi:

Substances chimiques

Copper 789U1901C5

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

110600

Informations de copyright

Published by Elsevier Inc.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The author(s) declare that there are no conflicts of interest.

Auteurs

Juliana González-Tobón (J)

Plant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.

Allison Diaz (A)

Plant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.

Tyler C Helmann (TC)

United States Department of Agriculture - Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY 14853, USA.

Mary Ann Karp (MA)

United States Department of Agriculture - Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY 14853, USA.

Margery Daughtrey (M)

Plant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.

Paul V Stodghill (PV)

Plant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA; United States Department of Agriculture - Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY 14853, USA.

Melanie J Filiatrault (MJ)

Plant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA; United States Department of Agriculture - Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY 14853, USA. Electronic address: melanie.filiatrault@usda.gov.

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Rosanae › Malvales › Malvaceae › Hibiscus › Genomic insights into a Pseudomonas amygdali...
questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Rosanae › Rosales › Rosaceae › Rosa › Genomic insights into a Pseudomonas amygdali...
questionsmedicales.fr › Produits chimiques inorganiques › Métaux › Métaux lourds › Cuivre › Genomic insights into a Pseudomonas amygdali...
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Génétique › Génomique › Genomic insights into a Pseudomonas amygdali...
questionsmedicales.fr › Bactéries › Proteobacteria › Gammaproteobacteria › Pseudomonadaceae › Pseudomonas › Genomic insights into a Pseudomonas amygdali...