Histone Maps in
Gossypium darwinii
allotetraploid
chromatin state
domestication
histone modification
Journal
International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791
Informations de publication
Date de publication:
25 Jun 2023
25 Jun 2023
Historique:
received:
21
04
2023
revised:
16
06
2023
accepted:
21
06
2023
medline:
17
7
2023
pubmed:
14
7
2023
entrez:
14
7
2023
Statut:
epublish
Résumé
The functional annotation of genomes, including chromatin modifications, is essential to understand the intricate architecture of chromatin and the consequential gene regulation. However, such an annotation remains limited for cotton genomes. Here, we conducted chromatin profiling in a wild allotetraploid cotton
Identifiants
pubmed: 37445787
pii: ijms241310607
doi: 10.3390/ijms241310607
pmc: PMC10341804
pii:
doi:
Substances chimiques
Histones
0
Chromatin
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : Startup Foundation from Nantong University
ID : 03083074 and 135421609105
Organisme : National Natural Science Foundation of China
ID : 32070544 and 32200543
Organisme : Natural Science Foundation of Jiangsu Province
ID : BK20220604
Organisme : Science and Technology Program of Nantong City
ID : JC12022064
Références
Plant Physiol. 2022 Mar 28;188(4):1811-1824
pubmed: 35134247
Genome Biol. 2014;15(12):550
pubmed: 25516281
Proc Natl Acad Sci U S A. 2022 Nov;119(44):e2209743119
pubmed: 36279429
Genome Biol. 2019 Mar 22;20(1):62
pubmed: 30902105
EMBO J. 2011 May 18;30(10):1928-38
pubmed: 21487388
Bioinformatics. 2023 Jan 1;39(1):
pubmed: 36342196
Nat Methods. 2012 Feb 28;9(3):215-6
pubmed: 22373907
Mol Plant. 2021 Apr 5;14(4):604-619
pubmed: 33387675
Nat Commun. 2020 May 27;11(1):2658
pubmed: 32461553
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Nat Protoc. 2017 Dec;12(12):2478-2492
pubmed: 29120462
Front Genet. 2022 Feb 16;13:818727
pubmed: 35251130
Nat Commun. 2015 Aug 18;6:7973
pubmed: 26282110
PLoS Genet. 2011 Apr;7(4):e1002040
pubmed: 21490956
Front Plant Sci. 2022 Oct 07;13:907937
pubmed: 36275563
Nat Commun. 2018 Jan 26;9(1):391
pubmed: 29374152
Bioinformatics. 2014 Apr 1;30(7):923-30
pubmed: 24227677
Nucleic Acids Res. 2016 Jul 8;44(W1):W160-5
pubmed: 27079975
Nat Genet. 2020 May;52(5):525-533
pubmed: 32313247
Nat Biotechnol. 2010 May;28(5):511-5
pubmed: 20436464
Nucleic Acids Res. 2011 Sep 1;39(17):7415-27
pubmed: 21652639
Protein Cell. 2014 Dec;5(12):889-98
pubmed: 25103896
Nature. 2020 Jul;583(7818):744-751
pubmed: 32728240
BMC Biol. 2018 Sep 20;16(1):104
pubmed: 30236109
Genome Biol. 2017 May 31;18(1):99
pubmed: 28558752
Mol Plant. 2020 Sep 7;13(9):1238-1240
pubmed: 32688032
Int J Biol Macromol. 2021 Aug 1;184:1035-1061
pubmed: 34174315
Nat Rev Genet. 2017 Jul;18(7):411-424
pubmed: 28502977
Adv Sci (Weinh). 2021 Mar 15;8(10):2003634
pubmed: 34026441
Front Plant Sci. 2022 Dec 15;13:984702
pubmed: 36589114
Plant Physiol. 2021 Aug 3;186(4):1951-1969
pubmed: 33890670
Development. 2019 Oct 1;146(19):
pubmed: 31575610
Curr Opin Plant Biol. 2018 Apr;42:37-48
pubmed: 29502038
Genome Biol. 2015 May 20;16:102
pubmed: 25990474
Nat Commun. 2020 Feb 28;11(1):1122
pubmed: 32111823
Bioinformatics. 2009 May 1;25(9):1105-11
pubmed: 19289445
Genome Biol. 2008;9(9):R137
pubmed: 18798982
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Genome Biol. 2019 Jul 15;20(1):139
pubmed: 31307500
Nat Commun. 2021 Jul 5;12(1):4110
pubmed: 34226551
Genome Res. 2014 Dec;24(12):1963-76
pubmed: 25319995
Dev Cell. 2022 Feb 28;57(4):526-542.e7
pubmed: 35063083
Front Genet. 2022 Jun 08;13:921096
pubmed: 35754813
Genome Biol. 2016 Mar 01;17:37
pubmed: 26926526
Elife. 2020 Oct 27;9:
pubmed: 33107825
Plant Physiol. 2012 Nov;160(3):1237-50
pubmed: 22987884
Genome Biol. 2019 Dec 16;20(1):275
pubmed: 31843001
Nat Biotechnol. 2015 May;33(5):531-7
pubmed: 25893781
Front Plant Sci. 2013 Aug 01;4:290
pubmed: 23914199
Proc Natl Acad Sci U S A. 2019 Feb 26;116(9):3668-3677
pubmed: 30755522
Bioinformatics. 2010 Mar 15;26(6):841-2
pubmed: 20110278
Mol Cell. 2016 Jun 2;62(5):728-44
pubmed: 27259204
Plant Physiol. 2017 Apr;173(4):2243-2252
pubmed: 28202597
Plant Physiol. 2020 Mar;182(3):1494-1509
pubmed: 31857425
Nat Commun. 2021 Nov 15;12(1):6605
pubmed: 34782608