Theoretical and Experimental Studies on Plant Light-Dependent Protochlorophyllide Oxidoreductase as a Novel Target for Searching Potential Herbicides.
LPOR
NADPH
binding free energy
herbicide
molecular docking
molecular dynamics simulation
transcriptome
virtual screening
Journal
Journal of agricultural and food chemistry
ISSN: 1520-5118
Titre abrégé: J Agric Food Chem
Pays: United States
ID NLM: 0374755
Informations de publication
Date de publication:
02 Aug 2023
02 Aug 2023
Historique:
medline:
3
8
2023
pubmed:
19
7
2023
entrez:
19
7
2023
Statut:
ppublish
Résumé
Herbicide resistance is a prevalent problem that has posed a foremost challenge to crop production worldwide. Light-dependent enzyme NADPH: protochlorophyllide oxidoreductase (LPOR) in plants is a metabolic target that could satisfy this unmet demand. Herein, for the first time, we embarked on proposing a new mode of action of herbicides by performing structure-based virtual screening targeting multiple LPOR binding sites, with the determination of further bioactivity on the lead series. The feasibility of exploiting high selectivity and safety herbicides targeting LPOR was discussed from the perspective of the origin and phylogeny. Besides, we revealed the structural rearrangement and the selection key for NADPH cofactor binding to LPOR. Based on these, multitarget virtual screening was performed and the result identified compounds 2 affording micromolar inhibition, in which the IC
Identifiants
pubmed: 37467369
doi: 10.1021/acs.jafc.3c01783
doi:
Substances chimiques
Protochlorophyllide
20369-67-9
Herbicides
0
NADP
53-59-8
Oxidoreductases
EC 1.-
Oxidoreductases Acting on CH-CH Group Donors
EC 1.3.-
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM